miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 16787 0.66 0.810027
Target:  5'- cCAGgUGCGGCGCgucguguGGUGGGCG-CGc -3'
miRNA:   3'- -GUCgAUGCUGUGguu----CUACCCGCuGC- -5'
18983 3' -54 NC_004684.1 + 66436 0.66 0.810027
Target:  5'- aCAGgUACGACuuuacgUCAGGGU-GGCGGCGu -3'
miRNA:   3'- -GUCgAUGCUGu-----GGUUCUAcCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 55920 0.68 0.708692
Target:  5'- gAGCUG-GugGCCAAGGUggaccgGGGCGAgGc -3'
miRNA:   3'- gUCGAUgCugUGGUUCUA------CCCGCUgC- -5'
18983 3' -54 NC_004684.1 + 6388 0.68 0.708692
Target:  5'- gCAGCguguugGCGAaguugGCCGAGGUGuacagcucGGCGGCGg -3'
miRNA:   3'- -GUCGa-----UGCUg----UGGUUCUAC--------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 66341 0.68 0.697964
Target:  5'- cCGGU---GACGCCGGGgcGGGCGGCc -3'
miRNA:   3'- -GUCGaugCUGUGGUUCuaCCCGCUGc -5'
18983 3' -54 NC_004684.1 + 33475 0.69 0.687174
Target:  5'- uCGGCgGCGGCugCGguGGAcGcGGCGGCGg -3'
miRNA:   3'- -GUCGaUGCUGugGU--UCUaC-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 41565 0.69 0.685009
Target:  5'- cCGGgUGCGACACCuugcuucGGCGGCGg -3'
miRNA:   3'- -GUCgAUGCUGUGGuucuac-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 37513 0.69 0.676331
Target:  5'- cCGGUUACGACgACCu-GAUGcacgacugcGGCGGCGa -3'
miRNA:   3'- -GUCGAUGCUG-UGGuuCUAC---------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 58311 0.69 0.676331
Target:  5'- aCAGCUcaccgGCGACGCCGGGucAUGGcGCGccCGg -3'
miRNA:   3'- -GUCGA-----UGCUGUGGUUC--UACC-CGCu-GC- -5'
18983 3' -54 NC_004684.1 + 25272 0.69 0.676331
Target:  5'- aAGCUGCG-CACCAAGGgccuuccgGccacaccaGGCGGCGg -3'
miRNA:   3'- gUCGAUGCuGUGGUUCUa-------C--------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 6838 0.68 0.719345
Target:  5'- uGGcCUACGGCGCgAA---GGGCGACGc -3'
miRNA:   3'- gUC-GAUGCUGUGgUUcuaCCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 55857 0.68 0.719345
Target:  5'- gCAGUgcgacguCGACGCCAAGGUGGccGgGGCa -3'
miRNA:   3'- -GUCGau-----GCUGUGGUUCUACC--CgCUGc -5'
18983 3' -54 NC_004684.1 + 40542 0.66 0.810027
Target:  5'- uGGCgaccuccGCGACcuCCAGGAgcUGGGCGAa- -3'
miRNA:   3'- gUCGa------UGCUGu-GGUUCU--ACCCGCUgc -5'
18983 3' -54 NC_004684.1 + 26739 0.67 0.800547
Target:  5'- aGGCccGCGACACCcuGAUGGagaugacCGACGa -3'
miRNA:   3'- gUCGa-UGCUGUGGuuCUACCc------GCUGC- -5'
18983 3' -54 NC_004684.1 + 43459 0.67 0.800547
Target:  5'- gGGC-GCGGCAgC-AGGUGcGGCGGCa -3'
miRNA:   3'- gUCGaUGCUGUgGuUCUAC-CCGCUGc -5'
18983 3' -54 NC_004684.1 + 26368 0.67 0.781074
Target:  5'- gGGCaACGGCACCGGcaacGUcGGCGGCGa -3'
miRNA:   3'- gUCGaUGCUGUGGUUc---UAcCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 18607 0.7 0.621704
Target:  5'- uGGCUuuGAgGCCAGcGAcUGGGCGACc -3'
miRNA:   3'- gUCGAugCUgUGGUU-CU-ACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 4775 0.7 0.621704
Target:  5'- aAGCgccACGGCuCCGGGGUGcGCGACGc -3'
miRNA:   3'- gUCGa--UGCUGuGGUUCUACcCGCUGC- -5'
18983 3' -54 NC_004684.1 + 41323 0.69 0.654532
Target:  5'- gGGCUACGGCACCGcGAccGcCGACGg -3'
miRNA:   3'- gUCGAUGCUGUGGUuCUacCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 61875 0.68 0.729913
Target:  5'- aCAGCUGCGcCACCA----GGGCGuCa -3'
miRNA:   3'- -GUCGAUGCuGUGGUucuaCCCGCuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.