miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 19683 0.67 0.780084
Target:  5'- cCGGCgcgGCGGCaaggccuggccgaGCCAAGAccUGGGaCGGCc -3'
miRNA:   3'- -GUCGa--UGCUG-------------UGGUUCU--ACCC-GCUGc -5'
18983 3' -54 NC_004684.1 + 24986 0.67 0.76099
Target:  5'- gCGGCgGCGGCcaucucguaGCCAcGAUGGcGCGGCu -3'
miRNA:   3'- -GUCGaUGCUG---------UGGUuCUACC-CGCUGc -5'
18983 3' -54 NC_004684.1 + 24283 0.67 0.76099
Target:  5'- gGGCaccGCaGGCACCGGcauuuUGGGCGGCGg -3'
miRNA:   3'- gUCGa--UG-CUGUGGUUcu---ACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 3562 0.67 0.750747
Target:  5'- gCGGCccgGCGugGCUGAGcuUGGGCGAg- -3'
miRNA:   3'- -GUCGa--UGCugUGGUUCu-ACCCGCUgc -5'
18983 3' -54 NC_004684.1 + 53790 0.68 0.740384
Target:  5'- cCGGC-GCGGCGCUggGAUcGGGUuGCGc -3'
miRNA:   3'- -GUCGaUGCUGUGGuuCUA-CCCGcUGC- -5'
18983 3' -54 NC_004684.1 + 30305 0.68 0.740384
Target:  5'- uCGGCUACGACGaCGAGGUcgGGGCa--- -3'
miRNA:   3'- -GUCGAUGCUGUgGUUCUA--CCCGcugc -5'
18983 3' -54 NC_004684.1 + 27167 0.68 0.740384
Target:  5'- cCAGCUACGGCGgCGAccuggccacggcGAUcuuuGGCGGCGg -3'
miRNA:   3'- -GUCGAUGCUGUgGUU------------CUAc---CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 35524 0.68 0.729913
Target:  5'- -cGCUACuGCACCGAGugcGGGC-ACGa -3'
miRNA:   3'- guCGAUGcUGUGGUUCua-CCCGcUGC- -5'
18983 3' -54 NC_004684.1 + 57771 0.68 0.729913
Target:  5'- gCGGuCUACGACACCGAcaccGAcUGGGCcaaGACc -3'
miRNA:   3'- -GUC-GAUGCUGUGGUU----CU-ACCCG---CUGc -5'
18983 3' -54 NC_004684.1 + 61875 0.68 0.729913
Target:  5'- aCAGCUGCGcCACCA----GGGCGuCa -3'
miRNA:   3'- -GUCGAUGCuGUGGUucuaCCCGCuGc -5'
18983 3' -54 NC_004684.1 + 55857 0.68 0.719345
Target:  5'- gCAGUgcgacguCGACGCCAAGGUGGccGgGGCa -3'
miRNA:   3'- -GUCGau-----GCUGUGGUUCUACC--CgCUGc -5'
18983 3' -54 NC_004684.1 + 6838 0.68 0.719345
Target:  5'- uGGcCUACGGCGCgAA---GGGCGACGc -3'
miRNA:   3'- gUC-GAUGCUGUGgUUcuaCCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 55920 0.68 0.708692
Target:  5'- gAGCUG-GugGCCAAGGUggaccgGGGCGAgGc -3'
miRNA:   3'- gUCGAUgCugUGGUUCUA------CCCGCUgC- -5'
18983 3' -54 NC_004684.1 + 6388 0.68 0.708692
Target:  5'- gCAGCguguugGCGAaguugGCCGAGGUGuacagcucGGCGGCGg -3'
miRNA:   3'- -GUCGa-----UGCUg----UGGUUCUAC--------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 42725 0.68 0.697964
Target:  5'- -cGCUgGCGGCACCAGcaccgGcGGCGGCGg -3'
miRNA:   3'- guCGA-UGCUGUGGUUcua--C-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 66341 0.68 0.697964
Target:  5'- cCGGU---GACGCCGGGgcGGGCGGCc -3'
miRNA:   3'- -GUCGaugCUGUGGUUCuaCCCGCUGc -5'
18983 3' -54 NC_004684.1 + 24187 0.68 0.694734
Target:  5'- gGGCUGCGGCACCuugaaguucGGGAUGGucacgccguuguagGUGACc -3'
miRNA:   3'- gUCGAUGCUGUGG---------UUCUACC--------------CGCUGc -5'
18983 3' -54 NC_004684.1 + 33475 0.69 0.687174
Target:  5'- uCGGCgGCGGCugCGguGGAcGcGGCGGCGg -3'
miRNA:   3'- -GUCGaUGCUGugGU--UCUaC-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 41565 0.69 0.685009
Target:  5'- cCGGgUGCGACACCuugcuucGGCGGCGg -3'
miRNA:   3'- -GUCgAUGCUGUGGuucuac-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 49521 0.69 0.683926
Target:  5'- gCGGCaACGGCACCAAGAccaUGuccaagcuccagguGGUGGCGc -3'
miRNA:   3'- -GUCGaUGCUGUGGUUCU---AC--------------CCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.