miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 33471 0.67 0.58573
Target:  5'- uGCCUCGGCgGcggcugcgguGGaCGCGgcGGCGg--- -3'
miRNA:   3'- -CGGAGCCGgU----------UC-GCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 34551 0.67 0.58573
Target:  5'- gGCCaUGGCCAgcuacgagAGCGCGcuGGCGg--- -3'
miRNA:   3'- -CGGaGCCGGU--------UCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 40438 0.67 0.58573
Target:  5'- gGCCUUGGUCAgcGGUGCccAGGCGg--- -3'
miRNA:   3'- -CGGAGCCGGU--UCGCGcuUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 41682 0.67 0.58573
Target:  5'- aCCUCGGCaacacccAGCGCGGcgacGGCGUgcgguUCAa -3'
miRNA:   3'- cGGAGCCGgu-----UCGCGCUu---CCGCA-----AGU- -5'
18984 3' -57.1 NC_004684.1 + 61347 0.67 0.58573
Target:  5'- gGUggCGGCCAGGUgaaugGUGguGGCGUUCGa -3'
miRNA:   3'- -CGgaGCCGGUUCG-----CGCuuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 3706 0.67 0.628599
Target:  5'- cGCUUCGGCCAcuCGUGuucGGCGgccCAg -3'
miRNA:   3'- -CGGAGCCGGUucGCGCuu-CCGCaa-GU- -5'
18984 3' -57.1 NC_004684.1 + 33200 0.68 0.543446
Target:  5'- aCCUUGGCC-AGCGCGAGcgccuGCGUcggCAg -3'
miRNA:   3'- cGGAGCCGGuUCGCGCUUc----CGCAa--GU- -5'
18984 3' -57.1 NC_004684.1 + 21384 0.68 0.550782
Target:  5'- cGCCUgcguugcgcagauaCGGCCGGGCGCGcgugccGGGGUGg--- -3'
miRNA:   3'- -CGGA--------------GCCGGUUCGCGC------UUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 47843 0.68 0.553935
Target:  5'- cGCCUgaCGGCacguAGCGCGAaccggAGGCGg--- -3'
miRNA:   3'- -CGGA--GCCGgu--UCGCGCU-----UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 61197 0.68 0.564484
Target:  5'- gGCCUCggcguacaccuGGCCGuuCGCGucGGCGaUCAg -3'
miRNA:   3'- -CGGAG-----------CCGGUucGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 852 0.68 0.522672
Target:  5'- uGCCUCGGCgGuguccaggAGCGCcgccAGGGCG-UCGg -3'
miRNA:   3'- -CGGAGCCGgU--------UCGCGc---UUCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 6825 0.68 0.533023
Target:  5'- gGCCUggaggagcUGGCCuacGGCGCGAAgGGCGa--- -3'
miRNA:   3'- -CGGA--------GCCGGu--UCGCGCUU-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 21204 0.68 0.564484
Target:  5'- uCCg-GGCCAAGCacGCGcAGGCGcUUCAc -3'
miRNA:   3'- cGGagCCGGUUCG--CGCuUCCGC-AAGU- -5'
18984 3' -57.1 NC_004684.1 + 6222 0.68 0.564484
Target:  5'- aUCUCGGCCAGcuGgGCGGccAGGCcUUCGa -3'
miRNA:   3'- cGGAGCCGGUU--CgCGCU--UCCGcAAGU- -5'
18984 3' -57.1 NC_004684.1 + 8830 0.69 0.482108
Target:  5'- -gCUC-GCCGGGCGCGgcGGCGaaCAu -3'
miRNA:   3'- cgGAGcCGGUUCGCGCuuCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 32072 0.69 0.492112
Target:  5'- gGCCUgCGGgUAgaucAGCGCGGAGGUGgugaUCGg -3'
miRNA:   3'- -CGGA-GCCgGU----UCGCGCUUCCGCa---AGU- -5'
18984 3' -57.1 NC_004684.1 + 45147 0.69 0.462403
Target:  5'- gGCCUCGGCgAAGU-CGAcGGCGUccUCc -3'
miRNA:   3'- -CGGAGCCGgUUCGcGCUuCCGCA--AGu -5'
18984 3' -57.1 NC_004684.1 + 55555 0.69 0.511377
Target:  5'- uCCUCGGCCAGGCcuucaccGCGcuuGGCGa--- -3'
miRNA:   3'- cGGAGCCGGUUCG-------CGCuu-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 39768 0.69 0.482108
Target:  5'- cUCggCGGCCGAGCGCGAgcacgAGGCa---- -3'
miRNA:   3'- cGGa-GCCGGUUCGCGCU-----UCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 25872 0.69 0.472204
Target:  5'- gGCCUCGGCCAGGC-CG--GGCagaacgUCAg -3'
miRNA:   3'- -CGGAGCCGGUUCGcGCuuCCGca----AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.