Results 41 - 60 of 91 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 61197 | 0.68 | 0.564484 |
Target: 5'- gGCCUCggcguacaccuGGCCGuuCGCGucGGCGaUCAg -3' miRNA: 3'- -CGGAG-----------CCGGUucGCGCuuCCGCaAGU- -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 33200 | 0.68 | 0.543446 |
Target: 5'- aCCUUGGCC-AGCGCGAGcgccuGCGUcggCAg -3' miRNA: 3'- cGGAGCCGGuUCGCGCUUc----CGCAa--GU- -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 852 | 0.68 | 0.522672 |
Target: 5'- uGCCUCGGCgGuguccaggAGCGCcgccAGGGCG-UCGg -3' miRNA: 3'- -CGGAGCCGgU--------UCGCGc---UUCCGCaAGU- -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 6825 | 0.68 | 0.533023 |
Target: 5'- gGCCUggaggagcUGGCCuacGGCGCGAAgGGCGa--- -3' miRNA: 3'- -CGGA--------GCCGGu--UCGCGCUU-CCGCaagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 21384 | 0.68 | 0.550782 |
Target: 5'- cGCCUgcguugcgcagauaCGGCCGGGCGCGcgugccGGGGUGg--- -3' miRNA: 3'- -CGGA--------------GCCGGUUCGCGC------UUCCGCaagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 56049 | 0.67 | 0.595342 |
Target: 5'- gGCCUggaGGCCGccgucaaGGCGC-AAGGCGUg-- -3' miRNA: 3'- -CGGAg--CCGGU-------UCGCGcUUCCGCAagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 26537 | 0.67 | 0.628599 |
Target: 5'- cGCCUgggCGGUCAGGC-CGggGuguacGCGUUCc -3' miRNA: 3'- -CGGA---GCCGGUUCGcGCuuC-----CGCAAGu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 50329 | 0.67 | 0.628599 |
Target: 5'- cGCC-CGGCCAGGCG-GgcGGCc---- -3' miRNA: 3'- -CGGaGCCGGUUCGCgCuuCCGcaagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 10581 | 0.67 | 0.628599 |
Target: 5'- cGCCgaucCGGCUGguucGGCGCGcGAGGUGcgCAa -3' miRNA: 3'- -CGGa---GCCGGU----UCGCGC-UUCCGCaaGU- -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 3805 | 0.67 | 0.571899 |
Target: 5'- cGCCUUGGCgGucaaggaucugcugGGCGCGuucGGCGUg-- -3' miRNA: 3'- -CGGAGCCGgU--------------UCGCGCuu-CCGCAagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 43623 | 0.67 | 0.575084 |
Target: 5'- gGCCacggugUGGCCGAGCGCGGuga-GUUCGu -3' miRNA: 3'- -CGGa-----GCCGGUUCGCGCUuccgCAAGU- -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 43957 | 0.67 | 0.596412 |
Target: 5'- cGCCgucgaGGCCGAGCaucagccguGCGcGGGCGUa-- -3' miRNA: 3'- -CGGag---CCGGUUCG---------CGCuUCCGCAagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 61347 | 0.67 | 0.58573 |
Target: 5'- gGUggCGGCCAGGUgaaugGUGguGGCGUUCGa -3' miRNA: 3'- -CGgaGCCGGUUCG-----CGCuuCCGCAAGU- -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 42533 | 0.67 | 0.575084 |
Target: 5'- cGCCgUGGUCGGcGUGCuGAcGGCGUUCGg -3' miRNA: 3'- -CGGaGCCGGUU-CGCG-CUuCCGCAAGU- -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 33471 | 0.67 | 0.58573 |
Target: 5'- uGCCUCGGCgGcggcugcgguGGaCGCGgcGGCGg--- -3' miRNA: 3'- -CGGAGCCGgU----------UC-GCGCuuCCGCaagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 34551 | 0.67 | 0.58573 |
Target: 5'- gGCCaUGGCCAgcuacgagAGCGCGcuGGCGg--- -3' miRNA: 3'- -CGGaGCCGGU--------UCGCGCuuCCGCaagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 40438 | 0.67 | 0.58573 |
Target: 5'- gGCCUUGGUCAgcGGUGCccAGGCGg--- -3' miRNA: 3'- -CGGAGCCGGU--UCGCGcuUCCGCaagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 41682 | 0.67 | 0.58573 |
Target: 5'- aCCUCGGCaacacccAGCGCGGcgacGGCGUgcgguUCAa -3' miRNA: 3'- cGGAGCCGgu-----UCGCGCUu---CCGCA-----AGU- -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 32096 | 0.67 | 0.606051 |
Target: 5'- aGCgUUGGCCAGGCGguggaguccacacCGGAGGaCGUg-- -3' miRNA: 3'- -CGgAGCCGGUUCGC-------------GCUUCC-GCAagu -5' |
|||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 25557 | 0.67 | 0.607123 |
Target: 5'- aGCCUCGGCgcGGUG-GAAGGUGcgCu -3' miRNA: 3'- -CGGAGCCGguUCGCgCUUCCGCaaGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home