miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 40438 0.67 0.58573
Target:  5'- gGCCUUGGUCAgcGGUGCccAGGCGg--- -3'
miRNA:   3'- -CGGAGCCGGU--UCGCGcuUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 41636 0.67 0.617855
Target:  5'- aCC-CGGCCAGGUG-GAAGGCa---- -3'
miRNA:   3'- cGGaGCCGGUUCGCgCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 50329 0.67 0.628599
Target:  5'- cGCC-CGGCCAGGCG-GgcGGCc---- -3'
miRNA:   3'- -CGGaGCCGGUUCGCgCuuCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 10581 0.67 0.628599
Target:  5'- cGCCgaucCGGCUGguucGGCGCGcGAGGUGcgCAa -3'
miRNA:   3'- -CGGa---GCCGGU----UCGCGC-UUCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 26537 0.67 0.628599
Target:  5'- cGCCUgggCGGUCAGGC-CGggGuguacGCGUUCc -3'
miRNA:   3'- -CGGA---GCCGGUUCGcGCuuC-----CGCAAGu -5'
18984 3' -57.1 NC_004684.1 + 25557 0.67 0.607123
Target:  5'- aGCCUCGGCgcGGUG-GAAGGUGcgCu -3'
miRNA:   3'- -CGGAGCCGguUCGCgCUUCCGCaaGu -5'
18984 3' -57.1 NC_004684.1 + 32096 0.67 0.606051
Target:  5'- aGCgUUGGCCAGGCGguggaguccacacCGGAGGaCGUg-- -3'
miRNA:   3'- -CGgAGCCGGUUCGC-------------GCUUCC-GCAagu -5'
18984 3' -57.1 NC_004684.1 + 43957 0.67 0.596412
Target:  5'- cGCCgucgaGGCCGAGCaucagccguGCGcGGGCGUa-- -3'
miRNA:   3'- -CGGag---CCGGUUCG---------CGCuUCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 25287 0.67 0.596412
Target:  5'- gGCCUucCGGCCAcaccAG-GCGgcGGCGgUUCGu -3'
miRNA:   3'- -CGGA--GCCGGU----UCgCGCuuCCGC-AAGU- -5'
18984 3' -57.1 NC_004684.1 + 56049 0.67 0.595342
Target:  5'- gGCCUggaGGCCGccgucaaGGCGC-AAGGCGUg-- -3'
miRNA:   3'- -CGGAg--CCGGU-------UCGCGcUUCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 41682 0.67 0.58573
Target:  5'- aCCUCGGCaacacccAGCGCGGcgacGGCGUgcgguUCAa -3'
miRNA:   3'- cGGAGCCGgu-----UCGCGCUu---CCGCA-----AGU- -5'
18984 3' -57.1 NC_004684.1 + 40674 0.66 0.649012
Target:  5'- cGCgCUCGGCCAgcaagguGGCGaCGAacuucagcuGGGCGg--- -3'
miRNA:   3'- -CG-GAGCCGGU-------UCGC-GCU---------UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 43749 0.66 0.650085
Target:  5'- cGCCUCGGCUGacgguaccGGCGUGGucAGGCc---- -3'
miRNA:   3'- -CGGAGCCGGU--------UCGCGCU--UCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 40363 0.66 0.66081
Target:  5'- gGCCUUGGCCuuggGGGCcucgGCGguGGCGgccuUCGg -3'
miRNA:   3'- -CGGAGCCGG----UUCG----CGCuuCCGCa---AGU- -5'
18984 3' -57.1 NC_004684.1 + 49177 0.66 0.682173
Target:  5'- aGUCUCGGCgGcGGCgGCGgcGGCGg--- -3'
miRNA:   3'- -CGGAGCCGgU-UCG-CGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 63579 0.66 0.671509
Target:  5'- uCCaUCGGCCugcgcGGCGCGgcGGUGg--- -3'
miRNA:   3'- cGG-AGCCGGu----UCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 65761 0.66 0.682173
Target:  5'- gGCgUUGGCCGccGCGCGccGGUGggCGc -3'
miRNA:   3'- -CGgAGCCGGUu-CGCGCuuCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 62593 0.66 0.691732
Target:  5'- uGCCguugcggUCGGCCAccGCGCcGAGGCGcUUg -3'
miRNA:   3'- -CGG-------AGCCGGUu-CGCGcUUCCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 42228 0.66 0.692792
Target:  5'- cGCCggugUCGGCaCcGGCGCGAAGaCGUg-- -3'
miRNA:   3'- -CGG----AGCCG-GuUCGCGCUUCcGCAagu -5'
18984 3' -57.1 NC_004684.1 + 58060 0.66 0.68855
Target:  5'- uCCUCGGCCAgcagcgugcgcaccAGCcgcaGCGAgcaccgcAGGCGgUCGg -3'
miRNA:   3'- cGGAGCCGGU--------------UCG----CGCU-------UCCGCaAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.