Results 81 - 91 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 51543 | 0.66 | 0.639345 |
Target: 5'- gGCCUCGGCCAccgGGCGCauGAGcuacGGCc---- -3' miRNA: 3'- -CGGAGCCGGU---UCGCG--CUU----CCGcaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 42228 | 0.66 | 0.692792 |
Target: 5'- cGCCggugUCGGCaCcGGCGCGAAGaCGUg-- -3' miRNA: 3'- -CGG----AGCCG-GuUCGCGCUUCcGCAagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 62593 | 0.66 | 0.691732 |
Target: 5'- uGCCguugcggUCGGCCAccGCGCcGAGGCGcUUg -3' miRNA: 3'- -CGG-------AGCCGGUu-CGCGcUUCCGCaAGu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 49177 | 0.66 | 0.682173 |
Target: 5'- aGUCUCGGCgGcGGCgGCGgcGGCGg--- -3' miRNA: 3'- -CGGAGCCGgU-UCG-CGCuuCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 65761 | 0.66 | 0.682173 |
Target: 5'- gGCgUUGGCCGccGCGCGccGGUGggCGc -3' miRNA: 3'- -CGgAGCCGGUu-CGCGCuuCCGCaaGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 63579 | 0.66 | 0.671509 |
Target: 5'- uCCaUCGGCCugcgcGGCGCGgcGGUGg--- -3' miRNA: 3'- cGG-AGCCGGu----UCGCGCuuCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 40363 | 0.66 | 0.66081 |
Target: 5'- gGCCUUGGCCuuggGGGCcucgGCGguGGCGgccuUCGg -3' miRNA: 3'- -CGGAGCCGG----UUCG----CGCuuCCGCa---AGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 43749 | 0.66 | 0.650085 |
Target: 5'- cGCCUCGGCUGacgguaccGGCGUGGucAGGCc---- -3' miRNA: 3'- -CGGAGCCGGU--------UCGCGCU--UCCGcaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 40674 | 0.66 | 0.649012 |
Target: 5'- cGCgCUCGGCCAgcaagguGGCGaCGAacuucagcuGGGCGg--- -3' miRNA: 3'- -CG-GAGCCGGU-------UCGC-GCU---------UCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 29920 | 0.66 | 0.639345 |
Target: 5'- uGCuCUCGcuuauggagcuGCC-AGCGUGAAGGUGUcggUCAc -3' miRNA: 3'- -CG-GAGC-----------CGGuUCGCGCUUCCGCA---AGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 58060 | 0.66 | 0.68855 |
Target: 5'- uCCUCGGCCAgcagcgugcgcaccAGCcgcaGCGAgcaccgcAGGCGgUCGg -3' miRNA: 3'- cGGAGCCGGU--------------UCG----CGCU-------UCCGCaAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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