miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 25557 0.67 0.607123
Target:  5'- aGCCUCGGCgcGGUG-GAAGGUGcgCu -3'
miRNA:   3'- -CGGAGCCGguUCGCgCUUCCGCaaGu -5'
18984 3' -57.1 NC_004684.1 + 19415 0.67 0.607123
Target:  5'- -gCUCGGCCAcG-GCGgcGGCGUa-- -3'
miRNA:   3'- cgGAGCCGGUuCgCGCuuCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 8266 0.67 0.607123
Target:  5'- cGCCU-GGCCcAGCGCGcccccGGCGaUCu -3'
miRNA:   3'- -CGGAgCCGGuUCGCGCuu---CCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 41636 0.67 0.617855
Target:  5'- aCC-CGGCCAGGUG-GAAGGCa---- -3'
miRNA:   3'- cGGaGCCGGUUCGCgCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 38137 0.67 0.617855
Target:  5'- gGCCUCGGggguggucGGCGCGuacAGGGCGUcCAg -3'
miRNA:   3'- -CGGAGCCggu-----UCGCGC---UUCCGCAaGU- -5'
18984 3' -57.1 NC_004684.1 + 23136 0.67 0.617855
Target:  5'- -gCUUGGCCAGGC-CGucaccAAGGCGUggCAg -3'
miRNA:   3'- cgGAGCCGGUUCGcGC-----UUCCGCAa-GU- -5'
18984 3' -57.1 NC_004684.1 + 3706 0.67 0.628599
Target:  5'- cGCUUCGGCCAcuCGUGuucGGCGgccCAg -3'
miRNA:   3'- -CGGAGCCGGUucGCGCuu-CCGCaa-GU- -5'
18984 3' -57.1 NC_004684.1 + 40726 0.67 0.628599
Target:  5'- gGCCcccaaguucgUCGGCC--GCGCGgcGGUGaUCAa -3'
miRNA:   3'- -CGG----------AGCCGGuuCGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 50329 0.67 0.628599
Target:  5'- cGCC-CGGCCAGGCG-GgcGGCc---- -3'
miRNA:   3'- -CGGaGCCGGUUCGCgCuuCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 26537 0.67 0.628599
Target:  5'- cGCCUgggCGGUCAGGC-CGggGuguacGCGUUCc -3'
miRNA:   3'- -CGGA---GCCGGUUCGcGCuuC-----CGCAAGu -5'
18984 3' -57.1 NC_004684.1 + 10581 0.67 0.628599
Target:  5'- cGCCgaucCGGCUGguucGGCGCGcGAGGUGcgCAa -3'
miRNA:   3'- -CGGa---GCCGGU----UCGCGC-UUCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 51543 0.66 0.639345
Target:  5'- gGCCUCGGCCAccgGGCGCauGAGcuacGGCc---- -3'
miRNA:   3'- -CGGAGCCGGU---UCGCG--CUU----CCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 29920 0.66 0.639345
Target:  5'- uGCuCUCGcuuauggagcuGCC-AGCGUGAAGGUGUcggUCAc -3'
miRNA:   3'- -CG-GAGC-----------CGGuUCGCGCUUCCGCA---AGU- -5'
18984 3' -57.1 NC_004684.1 + 23987 0.66 0.639345
Target:  5'- -gCUCGGUCGAGC-CGG-GGCGgUCGg -3'
miRNA:   3'- cgGAGCCGGUUCGcGCUuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 40674 0.66 0.649012
Target:  5'- cGCgCUCGGCCAgcaagguGGCGaCGAacuucagcuGGGCGg--- -3'
miRNA:   3'- -CG-GAGCCGGU-------UCGC-GCU---------UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 62497 0.66 0.650085
Target:  5'- aCCUgGGgC-AGCGCGAGGGCa---- -3'
miRNA:   3'- cGGAgCCgGuUCGCGCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 13122 0.66 0.650085
Target:  5'- aGCCgacCGGCCcGGCGaCGuaaccGGGCGcgUCGg -3'
miRNA:   3'- -CGGa--GCCGGuUCGC-GCu----UCCGCa-AGU- -5'
18984 3' -57.1 NC_004684.1 + 43749 0.66 0.650085
Target:  5'- cGCCUCGGCUGacgguaccGGCGUGGucAGGCc---- -3'
miRNA:   3'- -CGGAGCCGGU--------UCGCGCU--UCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 42966 0.66 0.650085
Target:  5'- uGCCagaGGCCGGGCGUGc-GGCGg--- -3'
miRNA:   3'- -CGGag-CCGGUUCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 40363 0.66 0.66081
Target:  5'- gGCCUUGGCCuuggGGGCcucgGCGguGGCGgccuUCGg -3'
miRNA:   3'- -CGGAGCCGG----UUCG----CGCuuCCGCa---AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.