miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 21204 0.68 0.564484
Target:  5'- uCCg-GGCCAAGCacGCGcAGGCGcUUCAc -3'
miRNA:   3'- cGGagCCGGUUCG--CGCuUCCGC-AAGU- -5'
18984 3' -57.1 NC_004684.1 + 6222 0.68 0.564484
Target:  5'- aUCUCGGCCAGcuGgGCGGccAGGCcUUCGa -3'
miRNA:   3'- cGGAGCCGGUU--CgCGCU--UCCGcAAGU- -5'
18984 3' -57.1 NC_004684.1 + 47843 0.68 0.553935
Target:  5'- cGCCUgaCGGCacguAGCGCGAaccggAGGCGg--- -3'
miRNA:   3'- -CGGA--GCCGgu--UCGCGCU-----UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 6825 0.68 0.533023
Target:  5'- gGCCUggaggagcUGGCCuacGGCGCGAAgGGCGa--- -3'
miRNA:   3'- -CGGA--------GCCGGu--UCGCGCUU-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 22428 0.69 0.512399
Target:  5'- gGCCUCaacGCCAucgccgucGGCGCGgcGGCGaUCc -3'
miRNA:   3'- -CGGAGc--CGGU--------UCGCGCuuCCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 50940 0.69 0.512399
Target:  5'- gGCCUCGuCCAGGCGCacGAuGGUGUg-- -3'
miRNA:   3'- -CGGAGCcGGUUCGCG--CUuCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 49713 0.69 0.492112
Target:  5'- cGCgCUCGGC--GGCGC---GGCGUUCAa -3'
miRNA:   3'- -CG-GAGCCGguUCGCGcuuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 27904 0.69 0.472204
Target:  5'- gGCC-CGGCCu-GCGCGAguuccuGGGCGa--- -3'
miRNA:   3'- -CGGaGCCGGuuCGCGCU------UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 25872 0.69 0.472204
Target:  5'- gGCCUCGGCCAGGC-CG--GGCagaacgUCAg -3'
miRNA:   3'- -CGGAGCCGGUUCGcGCuuCCGca----AGU- -5'
18984 3' -57.1 NC_004684.1 + 41429 0.71 0.379452
Target:  5'- gGCCUUGGCCcGGC-CGucGGCGgUCGc -3'
miRNA:   3'- -CGGAGCCGGuUCGcGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 15240 0.7 0.415091
Target:  5'- gGCggCGGCCAGcuGCGCGcuGGCGUggaUCAg -3'
miRNA:   3'- -CGgaGCCGGUU--CGCGCuuCCGCA---AGU- -5'
18984 3' -57.1 NC_004684.1 + 39418 0.7 0.433664
Target:  5'- gGCCaacCGGCCuGGGCGCGGcaacugGGGCGcUCGu -3'
miRNA:   3'- -CGGa--GCCGG-UUCGCGCU------UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 16359 0.7 0.44313
Target:  5'- cGCgUCgGGCCcGGCGCGAacaccGGGCGagCGa -3'
miRNA:   3'- -CGgAG-CCGGuUCGCGCU-----UCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 36857 0.72 0.337879
Target:  5'- aGCgUCGGCacCGGGCGCGGcccuGGCGgcgUCAg -3'
miRNA:   3'- -CGgAGCCG--GUUCGCGCUu---CCGCa--AGU- -5'
18984 3' -57.1 NC_004684.1 + 37721 0.72 0.322203
Target:  5'- gGCCaUGGCC-AGCGCaccGAcGGCGUUCGg -3'
miRNA:   3'- -CGGaGCCGGuUCGCG---CUuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 40758 0.73 0.307076
Target:  5'- aCCUugcUGGCCGAGCGCGAcuGGCGg--- -3'
miRNA:   3'- cGGA---GCCGGUUCGCGCUu-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 63452 0.73 0.278468
Target:  5'- cGCgUCGGCCGcucGGUGCGcuGGGCGgUCAc -3'
miRNA:   3'- -CGgAGCCGGU---UCGCGCu-UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 460 0.74 0.245744
Target:  5'- gGUCUCGGCCAGGuCGCGcauGGCcaUCAg -3'
miRNA:   3'- -CGGAGCCGGUUC-GCGCuu-CCGcaAGU- -5'
18984 3' -57.1 NC_004684.1 + 13362 0.75 0.227682
Target:  5'- aGCCaccggCGGCCAccAGCGCGcuGGCGgUCAc -3'
miRNA:   3'- -CGGa----GCCGGU--UCGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 58060 0.66 0.68855
Target:  5'- uCCUCGGCCAgcagcgugcgcaccAGCcgcaGCGAgcaccgcAGGCGgUCGg -3'
miRNA:   3'- cGGAGCCGGU--------------UCG----CGCU-------UCCGCaAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.