Results 81 - 91 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 65590 | 0.67 | 0.596412 |
Target: 5'- gGCCUCGGUCAugAGCcgcaCGgcGGCGUc-- -3' miRNA: 3'- -CGGAGCCGGU--UCGc---GCuuCCGCAagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 43623 | 0.67 | 0.575084 |
Target: 5'- gGCCacggugUGGCCGAGCGCGGuga-GUUCGu -3' miRNA: 3'- -CGGa-----GCCGGUUCGCGCUuccgCAAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 42533 | 0.67 | 0.575084 |
Target: 5'- cGCCgUGGUCGGcGUGCuGAcGGCGUUCGg -3' miRNA: 3'- -CGGaGCCGGUU-CGCG-CUuCCGCAAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 33471 | 0.67 | 0.58573 |
Target: 5'- uGCCUCGGCgGcggcugcgguGGaCGCGgcGGCGg--- -3' miRNA: 3'- -CGGAGCCGgU----------UC-GCGCuuCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 34551 | 0.67 | 0.58573 |
Target: 5'- gGCCaUGGCCAgcuacgagAGCGCGcuGGCGg--- -3' miRNA: 3'- -CGGaGCCGGU--------UCGCGCuuCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 40438 | 0.67 | 0.58573 |
Target: 5'- gGCCUUGGUCAgcGGUGCccAGGCGg--- -3' miRNA: 3'- -CGGAGCCGGU--UCGCGcuUCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 41682 | 0.67 | 0.58573 |
Target: 5'- aCCUCGGCaacacccAGCGCGGcgacGGCGUgcgguUCAa -3' miRNA: 3'- cGGAGCCGgu-----UCGCGCUu---CCGCA-----AGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 61347 | 0.67 | 0.58573 |
Target: 5'- gGUggCGGCCAGGUgaaugGUGguGGCGUUCGa -3' miRNA: 3'- -CGgaGCCGGUUCG-----CGCuuCCGCAAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 56049 | 0.67 | 0.595342 |
Target: 5'- gGCCUggaGGCCGccgucaaGGCGC-AAGGCGUg-- -3' miRNA: 3'- -CGGAg--CCGGU-------UCGCGcUUCCGCAagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 25287 | 0.67 | 0.596412 |
Target: 5'- gGCCUucCGGCCAcaccAG-GCGgcGGCGgUUCGu -3' miRNA: 3'- -CGGA--GCCGGU----UCgCGCuuCCGC-AAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 49177 | 0.66 | 0.682173 |
Target: 5'- aGUCUCGGCgGcGGCgGCGgcGGCGg--- -3' miRNA: 3'- -CGGAGCCGgU-UCG-CGCuuCCGCaagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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