miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 61921 0.66 0.889415
Target:  5'- uCGCgGGGUGcGGgcCACGGcacCCGCCGg -3'
miRNA:   3'- cGUGgCCUACuUCauGUGCU---GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 54637 0.66 0.889415
Target:  5'- aGgACgGGGUGuuGUGgGCGACCcCCa -3'
miRNA:   3'- -CgUGgCCUACuuCAUgUGCUGGuGGc -5'
18986 3' -52.7 NC_004684.1 + 4776 0.66 0.889415
Target:  5'- aGCGCCacGGcuccGggGUGCGCGAC-GCCa -3'
miRNA:   3'- -CGUGG--CCua--CuuCAUGUGCUGgUGGc -5'
18986 3' -52.7 NC_004684.1 + 5893 0.66 0.88503
Target:  5'- -gACCGGGUGgcGgcggcgcugaucgcGCACGACCgGCUGg -3'
miRNA:   3'- cgUGGCCUACuuCa-------------UGUGCUGG-UGGC- -5'
18986 3' -52.7 NC_004684.1 + 15377 0.66 0.882056
Target:  5'- cGCGCUGG-UGAucGGcUACGaGGCCGCCa -3'
miRNA:   3'- -CGUGGCCuACU--UC-AUGUgCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 37100 0.66 0.882056
Target:  5'- uGCugCGGAgaacguUGAGGaggGCugGcguGCCGCCa -3'
miRNA:   3'- -CGugGCCU------ACUUCa--UGugC---UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 44278 0.66 0.896516
Target:  5'- aGUACCGc--GAGGUGCugGcGCgCGCCGg -3'
miRNA:   3'- -CGUGGCcuaCUUCAUGugC-UG-GUGGC- -5'
18986 3' -52.7 NC_004684.1 + 5964 0.66 0.889415
Target:  5'- cGCGCCGG-UGA-----GCGACCgGCCGa -3'
miRNA:   3'- -CGUGGCCuACUucaugUGCUGG-UGGC- -5'
18986 3' -52.7 NC_004684.1 + 174 0.66 0.889415
Target:  5'- -gACCGGGUu-GGU-CGgGACCACCa -3'
miRNA:   3'- cgUGGCCUAcuUCAuGUgCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 47229 0.67 0.875217
Target:  5'- gGCACCGGGgccgccuacgccaccGAGGcGCACGcuCUGCCGg -3'
miRNA:   3'- -CGUGGCCUa--------------CUUCaUGUGCu-GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 66772 0.67 0.874444
Target:  5'- cCGCCGGGUGGgaAGacCugGgcACCGCCGg -3'
miRNA:   3'- cGUGGCCUACU--UCauGugC--UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 35869 0.67 0.874444
Target:  5'- uGCGCCacGAUGGAGcgcgGCGCGcgcugggucugcACCACCa -3'
miRNA:   3'- -CGUGGc-CUACUUCa---UGUGC------------UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 52565 0.67 0.874444
Target:  5'- cGCGCUGGAgguGGUG-GCGGCCauGCCGu -3'
miRNA:   3'- -CGUGGCCUacuUCAUgUGCUGG--UGGC- -5'
18986 3' -52.7 NC_004684.1 + 64801 0.67 0.874444
Target:  5'- -gACCcGAUGGAGgcCcugGCGGCCGCCa -3'
miRNA:   3'- cgUGGcCUACUUCauG---UGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 24724 0.67 0.866585
Target:  5'- cGCGCCGGAacgcguaGAcGUugGCcuGGCCGCCc -3'
miRNA:   3'- -CGUGGCCUa------CUuCAugUG--CUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 58766 0.67 0.858486
Target:  5'- cGCACgGucGAcGggGaACAUGGCCACCa -3'
miRNA:   3'- -CGUGgC--CUaCuuCaUGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 21211 0.67 0.858486
Target:  5'- cCGCCGGAcacguggaacGggGUGacCAUGACCugCGg -3'
miRNA:   3'- cGUGGCCUa---------CuuCAU--GUGCUGGugGC- -5'
18986 3' -52.7 NC_004684.1 + 36195 0.67 0.850154
Target:  5'- gGCACCucagccguGGAUGcAGcUGCGCagcguGGCCACCGc -3'
miRNA:   3'- -CGUGG--------CCUACuUC-AUGUG-----CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 58133 0.67 0.866585
Target:  5'- cGCgACCGGcUGAucgACaugGCGAUCACCGg -3'
miRNA:   3'- -CG-UGGCCuACUucaUG---UGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 12630 0.67 0.861754
Target:  5'- gGCACCGGcgagGAAcugacccccgacgauGUGCGCGAgCugCGc -3'
miRNA:   3'- -CGUGGCCua--CUU---------------CAUGUGCUgGugGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.