Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18989 | 3' | -59.3 | NC_004684.1 | + | 1955 | 0.66 | 0.514008 |
Target: 5'- aUCCuuCGGCcaGguGGAUAUGCGgcccGGCGu -3' miRNA: 3'- -AGGugGCCGc-CguCCUAUACGU----CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 10476 | 0.66 | 0.524171 |
Target: 5'- -aCGCUGGCGGCcuGGUAcccgGCGGuGCGc -3' miRNA: 3'- agGUGGCCGCCGucCUAUa---CGUC-CGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 62093 | 0.66 | 0.524171 |
Target: 5'- gUCC-CCGucgcgauugugcGCGGCGGG---UGCGGGUGg -3' miRNA: 3'- -AGGuGGC------------CGCCGUCCuauACGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 47474 | 0.66 | 0.524171 |
Target: 5'- aCCAgCGGCGGCAcGGAagcGCuuGGUGu -3' miRNA: 3'- aGGUgGCCGCCGU-CCUauaCGu-CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 45895 | 0.66 | 0.524171 |
Target: 5'- -aCGCUGGCGGCGaaacGAUGUuggugcgcucGCGGGCa -3' miRNA: 3'- agGUGGCCGCCGUc---CUAUA----------CGUCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 8675 | 0.66 | 0.524171 |
Target: 5'- gCCACCGGCgcguucaugcucGGCAGGcucaucucGUGC-GGCa -3' miRNA: 3'- aGGUGGCCG------------CCGUCCua------UACGuCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 18713 | 0.66 | 0.53441 |
Target: 5'- cUgACCGGUGGCAcgcucucgcuGGAUGUGgC-GGCGu -3' miRNA: 3'- aGgUGGCCGCCGU----------CCUAUAC-GuCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 2957 | 0.66 | 0.53441 |
Target: 5'- gCCAUCGGCGcGCugcuguUGCGGGUGg -3' miRNA: 3'- aGGUGGCCGC-CGuccuauACGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 59448 | 0.66 | 0.53441 |
Target: 5'- cCCACCGGUGuGCGccGGUcgGC-GGCGa -3' miRNA: 3'- aGGUGGCCGC-CGUc-CUAuaCGuCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 33513 | 0.66 | 0.53441 |
Target: 5'- cUCGCgGGCGGUGGcGGcUAUGCGGGg- -3' miRNA: 3'- aGGUGgCCGCCGUC-CU-AUACGUCCgc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 2784 | 0.66 | 0.53441 |
Target: 5'- -gCACCGGCcaGGCcGGggAUGCGGuGCc -3' miRNA: 3'- agGUGGCCG--CCGuCCuaUACGUC-CGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 37757 | 0.66 | 0.53441 |
Target: 5'- aUCCACCuGGCGcacCGGGucgAUGCcugaccGGGCGg -3' miRNA: 3'- -AGGUGG-CCGCc--GUCCua-UACG------UCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 22273 | 0.66 | 0.540587 |
Target: 5'- aCCGCCuGGCGGCGGccaaggcccGCGcGGCGg -3' miRNA: 3'- aGGUGG-CCGCCGUCcuaua----CGU-CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 46724 | 0.66 | 0.542651 |
Target: 5'- gCCACCgacauuacguugaGGCGGCGGuauUGUccagcgugcggacGCAGGCGg -3' miRNA: 3'- aGGUGG-------------CCGCCGUCcu-AUA-------------CGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 52578 | 0.66 | 0.543685 |
Target: 5'- -aCACCGGUcGCAacgcgcuGGAgGUGguGGCGg -3' miRNA: 3'- agGUGGCCGcCGU-------CCUaUACguCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 50023 | 0.66 | 0.544718 |
Target: 5'- aCCGUCGGCGGCAGcGuggccgGUGCcuGGCu -3' miRNA: 3'- aGGUGGCCGCCGUC-Cua----UACGu-CCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 40381 | 0.66 | 0.544718 |
Target: 5'- cUCGgCGGUGGCGGccuUcgGCAGGCc -3' miRNA: 3'- aGGUgGCCGCCGUCcu-AuaCGUCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 7350 | 0.66 | 0.551972 |
Target: 5'- cCCGCCGGUGcGCGccguGGAgaacgcauccgagcUGUGCuGGUGg -3' miRNA: 3'- aGGUGGCCGC-CGU----CCU--------------AUACGuCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 26411 | 0.66 | 0.55509 |
Target: 5'- gCCACCGGCGcGCuGGca--GCGGGg- -3' miRNA: 3'- aGGUGGCCGC-CGuCCuauaCGUCCgc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 33124 | 0.66 | 0.55509 |
Target: 5'- -gCGCUugGGCgGGCGGGAUcAUGUuGGCGa -3' miRNA: 3'- agGUGG--CCG-CCGUCCUA-UACGuCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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