Results 101 - 104 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18989 | 3' | -59.3 | NC_004684.1 | + | 64928 | 0.68 | 0.408592 |
Target: 5'- cCCAggUGGCGGCGGuGAgcgccugGCGGGCGg -3' miRNA: 3'- aGGUg-GCCGCCGUC-CUaua----CGUCCGC- -5' |
|||||||
18989 | 3' | -59.3 | NC_004684.1 | + | 65473 | 0.68 | 0.417621 |
Target: 5'- aCCAggcCCGGCaGGCcGGGUccgGCAGGUGc -3' miRNA: 3'- aGGU---GGCCG-CCGuCCUAua-CGUCCGC- -5' |
|||||||
18989 | 3' | -59.3 | NC_004684.1 | + | 66177 | 0.68 | 0.417621 |
Target: 5'- aUCCAgCCGGUGGUGGug-GUGguGGCc -3' miRNA: 3'- -AGGU-GGCCGCCGUCcuaUACguCCGc -5' |
|||||||
18989 | 3' | -59.3 | NC_004684.1 | + | 66695 | 0.69 | 0.365332 |
Target: 5'- cCCAcCCGGCGGCGGucuUGcgcUGCGcGGCGa -3' miRNA: 3'- aGGU-GGCCGCCGUCcu-AU---ACGU-CCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home