miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 26411 0.66 0.55509
Target:  5'- gCCACCGGCGcGCuGGca--GCGGGg- -3'
miRNA:   3'- aGGUGGCCGC-CGuCCuauaCGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 25781 0.7 0.309539
Target:  5'- cUCCACCGGCGGCAcgccGGUGUucgucaccaacugGcCGGGUGg -3'
miRNA:   3'- -AGGUGGCCGCCGUc---CUAUA-------------C-GUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 25296 0.67 0.493931
Target:  5'- gCCACaccaGGCGGCGGcGGUucgucgGCccuGGCGg -3'
miRNA:   3'- aGGUGg---CCGCCGUC-CUAua----CGu--CCGC- -5'
18989 3' -59.3 NC_004684.1 + 24492 0.67 0.503926
Target:  5'- aCCGCCGGgGGCGGugcc-GCAGGg- -3'
miRNA:   3'- aGGUGGCCgCCGUCcuauaCGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 24154 0.74 0.188226
Target:  5'- aCCGcuCCGGU-GCAGGGUccGCAGGCGg -3'
miRNA:   3'- aGGU--GGCCGcCGUCCUAuaCGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 23674 0.76 0.12514
Target:  5'- aCCACCGGCGGCGGuGUucgcgcggcccgGCAGGCu -3'
miRNA:   3'- aGGUGGCCGCCGUCcUAua----------CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 23291 0.69 0.362838
Target:  5'- gCCACCGGCGGCcuuGGugaugucggucaGUAUcuugccgauguugaGCAGGCu -3'
miRNA:   3'- aGGUGGCCGCCGu--CC------------UAUA--------------CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 23213 0.66 0.514008
Target:  5'- gCCGCCGGUGGCGacg---GCGGGUu -3'
miRNA:   3'- aGGUGGCCGCCGUccuauaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 22818 0.69 0.382252
Target:  5'- gUCgACCGGCaGUucccGGcgGUGCAGGCc -3'
miRNA:   3'- -AGgUGGCCGcCGu---CCuaUACGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 22698 0.67 0.484028
Target:  5'- gCC-CCGGCGGCgcAGGAcGUGgccaAGGCc -3'
miRNA:   3'- aGGuGGCCGCCG--UCCUaUACg---UCCGc -5'
18989 3' -59.3 NC_004684.1 + 22372 0.8 0.073113
Target:  5'- gUCgCGCUGGCGGU-GGAcGUGCAGGCGg -3'
miRNA:   3'- -AG-GUGGCCGCCGuCCUaUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 22273 0.66 0.540587
Target:  5'- aCCGCCuGGCGGCGGccaaggcccGCGcGGCGg -3'
miRNA:   3'- aGGUGG-CCGCCGUCcuaua----CGU-CCGC- -5'
18989 3' -59.3 NC_004684.1 + 20072 0.68 0.399686
Target:  5'- aCCACCGGUGccuGCuGGAgGUGguGGgGg -3'
miRNA:   3'- aGGUGGCCGC---CGuCCUaUACguCCgC- -5'
18989 3' -59.3 NC_004684.1 + 19780 0.7 0.317741
Target:  5'- cCCGCCGGgGGCGacaaGAUG-GCGGGCc -3'
miRNA:   3'- aGGUGGCCgCCGUc---CUAUaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 19594 0.7 0.317741
Target:  5'- cCCAguCCGGCGGCc-GAgGUGCuGGCGg -3'
miRNA:   3'- aGGU--GGCCGCCGucCUaUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 19410 0.69 0.357067
Target:  5'- gCCA-CGGCGGCGGcGUAUGC-GGCc -3'
miRNA:   3'- aGGUgGCCGCCGUCcUAUACGuCCGc -5'
18989 3' -59.3 NC_004684.1 + 19354 0.71 0.274968
Target:  5'- cUCCGgcuCCGGCGGCAGGGcAUcgaaGCAGGa- -3'
miRNA:   3'- -AGGU---GGCCGCCGUCCUaUA----CGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 19035 0.7 0.302949
Target:  5'- -gCACCGGCGGcCGGGcaggucaugaaGUGcgGCAGGCu -3'
miRNA:   3'- agGUGGCCGCC-GUCC-----------UAUa-CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 18713 0.66 0.53441
Target:  5'- cUgACCGGUGGCAcgcucucgcuGGAUGUGgC-GGCGu -3'
miRNA:   3'- aGgUGGCCGCCGU----------CCUAUAC-GuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 18431 0.7 0.325339
Target:  5'- gCCGCCGGuCGGCuccGGGGgcgGCAccGGCGu -3'
miRNA:   3'- aGGUGGCC-GCCG---UCCUauaCGU--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.