miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 31089 0.73 0.208685
Target:  5'- gCCGCCgagGGCuGGCAGGAcgccgcGCAGGCGc -3'
miRNA:   3'- aGGUGG---CCG-CCGUCCUaua---CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 24154 0.74 0.188226
Target:  5'- aCCGcuCCGGU-GCAGGGUccGCAGGCGg -3'
miRNA:   3'- aGGU--GGCCGcCGUCCUAuaCGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 60173 0.74 0.187738
Target:  5'- cUCCACgcgcucccagacgCGGCcuGGCAGGAUGUGCugaucGGCGu -3'
miRNA:   3'- -AGGUG-------------GCCG--CCGUCCUAUACGu----CCGC- -5'
18989 3' -59.3 NC_004684.1 + 61808 0.75 0.14465
Target:  5'- cCCGUCGGCaGGCGGGucgccuUGCAGGCGg -3'
miRNA:   3'- aGGUGGCCG-CCGUCCuau---ACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 54372 0.76 0.140463
Target:  5'- --uGCCGGgGGCGGGGUcgaggccAUGCGGGCa -3'
miRNA:   3'- aggUGGCCgCCGUCCUA-------UACGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 19594 0.7 0.317741
Target:  5'- cCCAguCCGGCGGCc-GAgGUGCuGGCGg -3'
miRNA:   3'- aGGU--GGCCGCCGucCUaUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 19780 0.7 0.317741
Target:  5'- cCCGCCGGgGGCGacaaGAUG-GCGGGCc -3'
miRNA:   3'- aGGUGGCCgCCGUc---CUAUaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 65473 0.68 0.417621
Target:  5'- aCCAggcCCGGCaGGCcGGGUccgGCAGGUGc -3'
miRNA:   3'- aGGU---GGCCG-CCGuCCUAua-CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 66177 0.68 0.417621
Target:  5'- aUCCAgCCGGUGGUGGug-GUGguGGCc -3'
miRNA:   3'- -AGGU-GGCCGCCGUCcuaUACguCCGc -5'
18989 3' -59.3 NC_004684.1 + 62790 0.68 0.417621
Target:  5'- gCCugCc-CGGCGGGGUugccggGCAGGCGg -3'
miRNA:   3'- aGGugGccGCCGUCCUAua----CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 64928 0.68 0.408592
Target:  5'- cCCAggUGGCGGCGGuGAgcgccugGCGGGCGg -3'
miRNA:   3'- aGGUg-GCCGCCGUC-CUaua----CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 61329 0.68 0.403234
Target:  5'- gCCGCCcucggcggcguagguGGCGGcCAGGugaaugGUGguGGCGu -3'
miRNA:   3'- aGGUGG---------------CCGCC-GUCCua----UACguCCGC- -5'
18989 3' -59.3 NC_004684.1 + 27460 0.69 0.393527
Target:  5'- aCCACCGGCGGUgacaagcguauugAGGuccAUGCGccgauuacagugaacGGCGg -3'
miRNA:   3'- aGGUGGCCGCCG-------------UCCua-UACGU---------------CCGC- -5'
18989 3' -59.3 NC_004684.1 + 38396 0.69 0.390906
Target:  5'- gCUACCGGCGGCGuGGAgaccgAgaaccuggccgaUGCGGGgGu -3'
miRNA:   3'- aGGUGGCCGCCGU-CCUa----U------------ACGUCCgC- -5'
18989 3' -59.3 NC_004684.1 + 22818 0.69 0.382252
Target:  5'- gUCgACCGGCaGUucccGGcgGUGCAGGCc -3'
miRNA:   3'- -AGgUGGCCGcCGu---CCuaUACGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 57356 0.69 0.365332
Target:  5'- cCCGCCGGUgagGGCGGGGUcuuuUGCGcGGUu -3'
miRNA:   3'- aGGUGGCCG---CCGUCCUAu---ACGU-CCGc -5'
18989 3' -59.3 NC_004684.1 + 66695 0.69 0.365332
Target:  5'- cCCAcCCGGCGGCGGucuUGcgcUGCGcGGCGa -3'
miRNA:   3'- aGGU-GGCCGCCGUCcu-AU---ACGU-CCGC- -5'
18989 3' -59.3 NC_004684.1 + 26438 0.69 0.365332
Target:  5'- gCCGCCGGUGGCccg--GUGUAcGGCGg -3'
miRNA:   3'- aGGUGGCCGCCGuccuaUACGU-CCGC- -5'
18989 3' -59.3 NC_004684.1 + 53782 0.69 0.354614
Target:  5'- gUCCcagACCGGCgcGGCgcuGGGAUcggguugcgccuccAUGCGGGCGu -3'
miRNA:   3'- -AGG---UGGCCG--CCG---UCCUA--------------UACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 33878 0.69 0.348935
Target:  5'- cCUACCaGGCGGUgcGGGcgGUGCcGGUGg -3'
miRNA:   3'- aGGUGG-CCGCCG--UCCuaUACGuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.