Results 101 - 104 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18989 | 3' | -59.3 | NC_004684.1 | + | 13048 | 0.7 | 0.302949 |
Target: 5'- gCCGCCGcGuCGGCGGGAgcaccggggGUGCcgacGGCGg -3' miRNA: 3'- aGGUGGC-C-GCCGUCCUa--------UACGu---CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 59008 | 0.7 | 0.317741 |
Target: 5'- gUCC-CCGGaGGCGGGGUGggGCGGGg- -3' miRNA: 3'- -AGGuGGCCgCCGUCCUAUa-CGUCCgc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 18431 | 0.7 | 0.325339 |
Target: 5'- gCCGCCGGuCGGCuccGGGGgcgGCAccGGCGu -3' miRNA: 3'- aGGUGGCC-GCCG---UCCUauaCGU--CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 9036 | 1.08 | 0.000612 |
Target: 5'- cUCCACCGGCGGCAGGAUAUGCAGGCGc -3' miRNA: 3'- -AGGUGGCCGCCGUCCUAUACGUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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