miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 45895 0.66 0.524171
Target:  5'- -aCGCUGGCGGCGaaacGAUGUuggugcgcucGCGGGCa -3'
miRNA:   3'- agGUGGCCGCCGUc---CUAUA----------CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 2957 0.66 0.53441
Target:  5'- gCCAUCGGCGcGCugcuguUGCGGGUGg -3'
miRNA:   3'- aGGUGGCCGC-CGuccuauACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 18713 0.66 0.53441
Target:  5'- cUgACCGGUGGCAcgcucucgcuGGAUGUGgC-GGCGu -3'
miRNA:   3'- aGgUGGCCGCCGU----------CCUAUAC-GuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 59448 0.66 0.53441
Target:  5'- cCCACCGGUGuGCGccGGUcgGC-GGCGa -3'
miRNA:   3'- aGGUGGCCGC-CGUc-CUAuaCGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 33513 0.66 0.53441
Target:  5'- cUCGCgGGCGGUGGcGGcUAUGCGGGg- -3'
miRNA:   3'- aGGUGgCCGCCGUC-CU-AUACGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 22273 0.66 0.540587
Target:  5'- aCCGCCuGGCGGCGGccaaggcccGCGcGGCGg -3'
miRNA:   3'- aGGUGG-CCGCCGUCcuaua----CGU-CCGC- -5'
18989 3' -59.3 NC_004684.1 + 7350 0.66 0.551972
Target:  5'- cCCGCCGGUGcGCGccguGGAgaacgcauccgagcUGUGCuGGUGg -3'
miRNA:   3'- aGGUGGCCGC-CGU----CCU--------------AUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 50023 0.66 0.544718
Target:  5'- aCCGUCGGCGGCAGcGuggccgGUGCcuGGCu -3'
miRNA:   3'- aGGUGGCCGCCGUC-Cua----UACGu-CCGc -5'
18989 3' -59.3 NC_004684.1 + 46724 0.66 0.542651
Target:  5'- gCCACCgacauuacguugaGGCGGCGGuauUGUccagcgugcggacGCAGGCGg -3'
miRNA:   3'- aGGUGG-------------CCGCCGUCcu-AUA-------------CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 47474 0.66 0.524171
Target:  5'- aCCAgCGGCGGCAcGGAagcGCuuGGUGu -3'
miRNA:   3'- aGGUgGCCGCCGU-CCUauaCGu-CCGC- -5'
18989 3' -59.3 NC_004684.1 + 25781 0.7 0.309539
Target:  5'- cUCCACCGGCGGCAcgccGGUGUucgucaccaacugGcCGGGUGg -3'
miRNA:   3'- -AGGUGGCCGCCGUc---CUAUA-------------C-GUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 19035 0.7 0.302949
Target:  5'- -gCACCGGCGGcCGGGcaggucaugaaGUGcgGCAGGCu -3'
miRNA:   3'- agGUGGCCGCC-GUCC-----------UAUa-CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 19594 0.7 0.317741
Target:  5'- cCCAguCCGGCGGCc-GAgGUGCuGGCGg -3'
miRNA:   3'- aGGU--GGCCGCCGucCUaUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 37553 0.68 0.436036
Target:  5'- cCCGCCGGUGGacccgguguacCGGGAgcUGgAGGUGc -3'
miRNA:   3'- aGGUGGCCGCC-----------GUCCUauACgUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 61169 0.68 0.42677
Target:  5'- gCCAcCCGGCcaggucGGCGGGGU-UGguGGCc -3'
miRNA:   3'- aGGU-GGCCG------CCGUCCUAuACguCCGc -5'
18989 3' -59.3 NC_004684.1 + 63222 0.73 0.214091
Target:  5'- gCCACCGGCGGCucGu--UGCcGGGCGu -3'
miRNA:   3'- aGGUGGCCGCCGucCuauACG-UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 65473 0.68 0.417621
Target:  5'- aCCAggcCCGGCaGGCcGGGUccgGCAGGUGc -3'
miRNA:   3'- aGGU---GGCCG-CCGuCCUAua-CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 66177 0.68 0.417621
Target:  5'- aUCCAgCCGGUGGUGGug-GUGguGGCc -3'
miRNA:   3'- -AGGU-GGCCGCCGUCcuaUACguCCGc -5'
18989 3' -59.3 NC_004684.1 + 62790 0.68 0.417621
Target:  5'- gCCugCc-CGGCGGGGUugccggGCAGGCGg -3'
miRNA:   3'- aGGugGccGCCGUCCUAua----CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 64928 0.68 0.408592
Target:  5'- cCCAggUGGCGGCGGuGAgcgccugGCGGGCGg -3'
miRNA:   3'- aGGUg-GCCGCCGUC-CUaua----CGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.