miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18990 5' -55.4 NC_004684.1 + 33291 0.66 0.794154
Target:  5'- cGGGcUGUcCGUC--GCCAUGGC-CACg -3'
miRNA:   3'- cCCCcACA-GCAGuuUGGUGCCGaGUG- -5'
18990 5' -55.4 NC_004684.1 + 61924 0.66 0.794154
Target:  5'- cGGGGUG-CGg---GCCACGGCaccCGCc -3'
miRNA:   3'- cCCCCACaGCaguuUGGUGCCGa--GUG- -5'
18990 5' -55.4 NC_004684.1 + 31508 0.66 0.794154
Target:  5'- ---aGUGUCGg-GGACCACGGCcCGCg -3'
miRNA:   3'- ccccCACAGCagUUUGGUGCCGaGUG- -5'
18990 5' -55.4 NC_004684.1 + 32052 0.66 0.772779
Target:  5'- cGGaGGUGgugaucggcuggCGUCGGAUUGCGGC-CACg -3'
miRNA:   3'- cCC-CCACa-----------GCAGUUUGGUGCCGaGUG- -5'
18990 5' -55.4 NC_004684.1 + 55251 0.66 0.764832
Target:  5'- cGGGGGUG-CuUCcGGCaGCGGCUcCACc -3'
miRNA:   3'- -CCCCCACaGcAGuUUGgUGCCGA-GUG- -5'
18990 5' -55.4 NC_004684.1 + 824 0.66 0.763833
Target:  5'- aGGGcgucGGUGUCGUCGGgguaguuggagcGCCaggccguccaccgGCGGCUgACc -3'
miRNA:   3'- -CCC----CCACAGCAGUU------------UGG-------------UGCCGAgUG- -5'
18990 5' -55.4 NC_004684.1 + 20115 0.66 0.754782
Target:  5'- uGGcGGG-GUCuUCAGgcACCACGGCcuccggugcggUCACa -3'
miRNA:   3'- -CC-CCCaCAGcAGUU--UGGUGCCG-----------AGUG- -5'
18990 5' -55.4 NC_004684.1 + 20787 0.66 0.743589
Target:  5'- cGGGucGGUGUCGUgguaggcCAcgaucuugauguAGCCACGGCUgAUc -3'
miRNA:   3'- -CCC--CCACAGCA-------GU------------UUGGUGCCGAgUG- -5'
18990 5' -55.4 NC_004684.1 + 13026 0.67 0.734332
Target:  5'- cGGGGGUGcCGaCGgcggcgaaguuGGCCgACGGCgCACc -3'
miRNA:   3'- -CCCCCACaGCaGU-----------UUGG-UGCCGaGUG- -5'
18990 5' -55.4 NC_004684.1 + 6885 0.67 0.723953
Target:  5'- uGGGGcgagGUCGUC-AACCugGuGCgccugCGCg -3'
miRNA:   3'- cCCCCa---CAGCAGuUUGGugC-CGa----GUG- -5'
18990 5' -55.4 NC_004684.1 + 32714 0.67 0.713487
Target:  5'- cGGcGGUGUCGUCccACUccgcaccggguACGGC-CACg -3'
miRNA:   3'- cCC-CCACAGCAGuuUGG-----------UGCCGaGUG- -5'
18990 5' -55.4 NC_004684.1 + 38433 0.67 0.702943
Target:  5'- cGGGGGUGaccaCGUCcaagguuGCCgACGGCgcgaUCACc -3'
miRNA:   3'- -CCCCCACa---GCAGuu-----UGG-UGCCG----AGUG- -5'
18990 5' -55.4 NC_004684.1 + 54641 0.67 0.702943
Target:  5'- cGGGGUGUUGUgGGcgacccCCAUGGC-CAUg -3'
miRNA:   3'- cCCCCACAGCAgUUu-----GGUGCCGaGUG- -5'
18990 5' -55.4 NC_004684.1 + 57025 0.68 0.66021
Target:  5'- cGGGGUgcgcugGUCgGUCAcggugGGCCACGGCaccagCGCg -3'
miRNA:   3'- cCCCCA------CAG-CAGU-----UUGGUGCCGa----GUG- -5'
18990 5' -55.4 NC_004684.1 + 60024 0.68 0.66021
Target:  5'- gGGGGGUcUCGUCuccagcaucuGCCA-GGcCUCGCa -3'
miRNA:   3'- -CCCCCAcAGCAGuu--------UGGUgCC-GAGUG- -5'
18990 5' -55.4 NC_004684.1 + 12876 0.69 0.617071
Target:  5'- cGGGGGUGcCGUUGuccucguuGGCCGCaGGCgcagccgCGCg -3'
miRNA:   3'- -CCCCCACaGCAGU--------UUGGUG-CCGa------GUG- -5'
18990 5' -55.4 NC_004684.1 + 54293 0.69 0.606295
Target:  5'- cGGGGGUGcgCG-CAucGGCCcccuugGCGGCUgACa -3'
miRNA:   3'- -CCCCCACa-GCaGU--UUGG------UGCCGAgUG- -5'
18990 5' -55.4 NC_004684.1 + 16537 0.69 0.606295
Target:  5'- uGGGGUGuggccuucaUCGUUAugGGCCugGGCgUCAUc -3'
miRNA:   3'- cCCCCAC---------AGCAGU--UUGGugCCG-AGUG- -5'
18990 5' -55.4 NC_004684.1 + 63667 0.69 0.574129
Target:  5'- cGGGGGUuUCGUCGGuguaCAUGGUUCu- -3'
miRNA:   3'- -CCCCCAcAGCAGUUug--GUGCCGAGug -5'
18990 5' -55.4 NC_004684.1 + 28639 0.75 0.290918
Target:  5'- cGGGGUGUUGgu-GACCGCgauuucuuccGGCUCGCa -3'
miRNA:   3'- cCCCCACAGCaguUUGGUG----------CCGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.