miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 42318 0.68 0.686364
Target:  5'- uUCGCGCCGGUGcCGacACcgGCgGCCa -3'
miRNA:   3'- -GGUGCGGCUACuGCauUGa-CGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 27541 0.68 0.64382
Target:  5'- gUCAcCGCCGGUGGUGgcACcgcgcuccaaUGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCUACUGCauUG----------ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 24725 0.68 0.64382
Target:  5'- gCGCGCCGGaacgcguaGACGuUGGCcugGCCGCCc -3'
miRNA:   3'- gGUGCGGCUa-------CUGC-AUUGa--CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 64442 0.68 0.654495
Target:  5'- aCCGCGCCGAccggguucaagGACGUGACcaaGCUGUa- -3'
miRNA:   3'- -GGUGCGGCUa----------CUGCAUUGa--CGGCGgc -5'
18991 3' -55.6 NC_004684.1 + 38421 0.68 0.686364
Target:  5'- aCCugGCCGAUGcggGgGUGACcacguccaagGuuGCCGa -3'
miRNA:   3'- -GGugCGGCUAC---UgCAUUGa---------CggCGGC- -5'
18991 3' -55.6 NC_004684.1 + 23041 0.68 0.686364
Target:  5'- gCCACGCCuuGGUGACGgccugGCCaaGCUGg -3'
miRNA:   3'- -GGUGCGG--CUACUGCauugaCGG--CGGC- -5'
18991 3' -55.6 NC_004684.1 + 3481 0.68 0.675777
Target:  5'- gCCACGCCGGgccgcacCGUGGCcGCCaggacGCCGc -3'
miRNA:   3'- -GGUGCGGCUacu----GCAUUGaCGG-----CGGC- -5'
18991 3' -55.6 NC_004684.1 + 43923 0.68 0.66515
Target:  5'- uCCugGuuGAUGGCGggcauUGGCUcccaggucucGCCGUCGa -3'
miRNA:   3'- -GGugCggCUACUGC-----AUUGA----------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42632 0.68 0.675777
Target:  5'- gCCGcCGCCGGUGcUGg---UGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCUACuGCauugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 11151 0.68 0.66515
Target:  5'- gUCGCGCCGucgGugGaccugGCCGCCa -3'
miRNA:   3'- -GGUGCGGCua-CugCauugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 62183 0.68 0.654495
Target:  5'- cCCG-GCCGAUGAUGgcgAACacguUGCCGUCc -3'
miRNA:   3'- -GGUgCGGCUACUGCa--UUG----ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 19218 0.68 0.654495
Target:  5'- gCCugaGCCGGUGAguUGUGACUgGCCaGUCGa -3'
miRNA:   3'- -GGug-CGGCUACU--GCAUUGA-CGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 40289 0.68 0.64382
Target:  5'- aCCGCGCCgucguuggugucGAUGGCGUAGCgcccgGCagGCaCGa -3'
miRNA:   3'- -GGUGCGG------------CUACUGCAUUGa----CGg-CG-GC- -5'
18991 3' -55.6 NC_004684.1 + 61684 0.68 0.64382
Target:  5'- gCACGCCauUGGCGUcGgUGCCGUgGg -3'
miRNA:   3'- gGUGCGGcuACUGCAuUgACGGCGgC- -5'
18991 3' -55.6 NC_004684.1 + 5680 0.68 0.64382
Target:  5'- -aACGCCGGUGGCauc-CUGaCGCCGg -3'
miRNA:   3'- ggUGCGGCUACUGcauuGACgGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 10638 0.68 0.642752
Target:  5'- gCugGCCGAgGACGaggAGCUGCCcagugagGUCGa -3'
miRNA:   3'- gGugCGGCUaCUGCa--UUGACGG-------CGGC- -5'
18991 3' -55.6 NC_004684.1 + 31918 0.68 0.654495
Target:  5'- cCCGCcCCGGUGGCGa---UGUCGCCc -3'
miRNA:   3'- -GGUGcGGCUACUGCauugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 13067 0.68 0.686364
Target:  5'- cCgGCGCuCGGUGuuGc--CUGCCGCCGc -3'
miRNA:   3'- -GgUGCG-GCUACugCauuGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 61014 0.68 0.686364
Target:  5'- aCugGCCGA-GGCGUGcgacGCcGUgGCCGa -3'
miRNA:   3'- gGugCGGCUaCUGCAU----UGaCGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 48943 0.68 0.686364
Target:  5'- uUCGCGCac-UGGCGcGACaUGCCGCCc -3'
miRNA:   3'- -GGUGCGgcuACUGCaUUG-ACGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.