miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 23041 0.68 0.686364
Target:  5'- gCCACGCCuuGGUGACGgccugGCCaaGCUGg -3'
miRNA:   3'- -GGUGCGG--CUACUGCauugaCGG--CGGC- -5'
18991 3' -55.6 NC_004684.1 + 38421 0.68 0.686364
Target:  5'- aCCugGCCGAUGcggGgGUGACcacguccaagGuuGCCGa -3'
miRNA:   3'- -GGugCGGCUAC---UgCAUUGa---------CggCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15812 0.68 0.686364
Target:  5'- aCCACGCCGAgcGACccgGUGGCgcgcgGCauCGCCa -3'
miRNA:   3'- -GGUGCGGCUa-CUG---CAUUGa----CG--GCGGc -5'
18991 3' -55.6 NC_004684.1 + 10638 0.68 0.642752
Target:  5'- gCugGCCGAgGACGaggAGCUGCCcagugagGUCGa -3'
miRNA:   3'- gGugCGGCUaCUGCa--UUGACGG-------CGGC- -5'
18991 3' -55.6 NC_004684.1 + 25404 0.69 0.62245
Target:  5'- aUACGCCGccagggccGACG-AACcGCCGCCGc -3'
miRNA:   3'- gGUGCGGCua------CUGCaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57136 0.69 0.62245
Target:  5'- aCCGCGCUGGUGcCGUGGCccaccgUGaCCGaCCa -3'
miRNA:   3'- -GGUGCGGCUACuGCAUUG------AC-GGC-GGc -5'
18991 3' -55.6 NC_004684.1 + 33328 0.69 0.601111
Target:  5'- gCACGCCcuuuuuGGUGAgCGUAAgcaguuggGCCGCCGg -3'
miRNA:   3'- gGUGCGG------CUACU-GCAUUga------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 6898 0.69 0.611772
Target:  5'- uCCAgGCCGAcGGCGUcgUagugGCCGUCGu -3'
miRNA:   3'- -GGUgCGGCUaCUGCAuuGa---CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 61541 0.69 0.611772
Target:  5'- aCGCGagcaCCGgcGGCGaGACaaUGCCGCCGg -3'
miRNA:   3'- gGUGC----GGCuaCUGCaUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26156 0.69 0.633135
Target:  5'- gUACGCCGAgguguUGGCcucgAACUcGCCGCCc -3'
miRNA:   3'- gGUGCGGCU-----ACUGca--UUGA-CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42640 0.69 0.633135
Target:  5'- gCCACGCCGAaGcCG-AAC-GCCGUCa -3'
miRNA:   3'- -GGUGCGGCUaCuGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 31862 0.69 0.590475
Target:  5'- -gACGCCGu--GCG-AGCUGCCcGCCGa -3'
miRNA:   3'- ggUGCGGCuacUGCaUUGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 54252 0.69 0.590475
Target:  5'- aCCGCGCCGG-GAC--AGCUccucagccagcGCCGCCa -3'
miRNA:   3'- -GGUGCGGCUaCUGcaUUGA-----------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 3981 0.69 0.600046
Target:  5'- uCCugGCCGGUGGCagcuccagucgauGUGcgcccaccacCUGCUGCCGu -3'
miRNA:   3'- -GGugCGGCUACUG-------------CAUu---------GACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24885 0.69 0.601111
Target:  5'- gCCGCGCCau---CGUGGCUacgagaugGCCGCCGc -3'
miRNA:   3'- -GGUGCGGcuacuGCAUUGA--------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57817 0.69 0.62245
Target:  5'- aCCACgGCCuGGUcccGGCGguGCUgGCCGCCGg -3'
miRNA:   3'- -GGUG-CGG-CUA---CUGCauUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 63053 0.69 0.62245
Target:  5'- aCCGCcuaacgGuuGGUGGCGgcuACcgUGCCGCCGu -3'
miRNA:   3'- -GGUG------CggCUACUGCau-UG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42202 0.69 0.633135
Target:  5'- gCCGuggaGCUGGUGGCc-GACgugGCCGCCGg -3'
miRNA:   3'- -GGUg---CGGCUACUGcaUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 62093 0.69 0.633135
Target:  5'- gCGCGUCGu---CGUAGCUGgCGCUGg -3'
miRNA:   3'- gGUGCGGCuacuGCAUUGACgGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 20125 0.69 0.576698
Target:  5'- aCCGCGCUGAUGGCGgggucuucaggcaccACgGCCuCCGg -3'
miRNA:   3'- -GGUGCGGCUACUGCau-------------UGaCGGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.