miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 18249 0.7 0.531735
Target:  5'- aCGCGCCGAUuucGAUGUuGCcgagcgugaacuccuUGCCGCCc -3'
miRNA:   3'- gGUGCGGCUA---CUGCAuUG---------------ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 41427 0.7 0.558796
Target:  5'- cCCGUGgCGGUGguGCGgcGgUGCCGCCGg -3'
miRNA:   3'- -GGUGCgGCUAC--UGCauUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 28570 0.7 0.53794
Target:  5'- cCCGCcaCCGGUGuGCGgcgGCUGCCuGCCGg -3'
miRNA:   3'- -GGUGc-GGCUAC-UGCau-UGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 14497 0.7 0.531735
Target:  5'- aCCACGCCGGucgccgguggcacggUGACGgugacccuggccUAACUGgCCGaCCGc -3'
miRNA:   3'- -GGUGCGGCU---------------ACUGC------------AUUGAC-GGC-GGC- -5'
18991 3' -55.6 NC_004684.1 + 18964 0.7 0.548337
Target:  5'- gCCGCGCUGGUGcCcUGAgUGCgGCCa -3'
miRNA:   3'- -GGUGCGGCUACuGcAUUgACGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 57902 0.7 0.558796
Target:  5'- gCCGgGCUGAagGugGccgGGCUGaCCGCCGa -3'
miRNA:   3'- -GGUgCGGCUa-CugCa--UUGAC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 38563 0.7 0.53794
Target:  5'- -gACGCCGGUGccugccuugucgGCGUGAUcgcGCCGUCGg -3'
miRNA:   3'- ggUGCGGCUAC------------UGCAUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 25913 0.7 0.53794
Target:  5'- gC-CGCCGAUGcCGUucugGCCGCCa -3'
miRNA:   3'- gGuGCGGCUACuGCAuugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 61183 0.7 0.548337
Target:  5'- gCCGCGUCGAccggUGGCGgcguuGCggagacaaUGCCGCCa -3'
miRNA:   3'- -GGUGCGGCU----ACUGCau---UG--------ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 47704 0.7 0.548337
Target:  5'- gCCgACGCCGAguaccGACGgcgGugUGCgGCCu -3'
miRNA:   3'- -GG-UGCGGCUa----CUGCa--UugACGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 53200 0.7 0.569309
Target:  5'- cCUAC-CCGcGUGAUGUGGCcuugcagGCCGCCGc -3'
miRNA:   3'- -GGUGcGGC-UACUGCAUUGa------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 25884 0.7 0.557747
Target:  5'- gCCA-GuuGGUGACG-AACaccggcgUGCCGCCGg -3'
miRNA:   3'- -GGUgCggCUACUGCaUUG-------ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 17527 0.71 0.51736
Target:  5'- gCCACGCCGGacGACGUG---GUCGCCu -3'
miRNA:   3'- -GGUGCGGCUa-CUGCAUugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 32766 0.71 0.51736
Target:  5'- --uUGCCGAgGcCGUAGCcaUGCCGCCGc -3'
miRNA:   3'- gguGCGGCUaCuGCAUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 43959 0.71 0.477205
Target:  5'- -uGCGCCGAacaUGGCGcacaUGCUGCCGa -3'
miRNA:   3'- ggUGCGGCU---ACUGCauugACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 33892 0.71 0.507187
Target:  5'- gCCgACGCCGAaccgcuCGaUGACuUGCCGCCGa -3'
miRNA:   3'- -GG-UGCGGCUacu---GC-AUUG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57767 0.71 0.467406
Target:  5'- gCCugGCCGAUGGCcac-CUGCUGUgGg -3'
miRNA:   3'- -GGugCGGCUACUGcauuGACGGCGgC- -5'
18991 3' -55.6 NC_004684.1 + 20416 0.71 0.4971
Target:  5'- gCgACGCCGAUcuCGaUGGCcGCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUAcuGC-AUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 5262 0.71 0.487105
Target:  5'- cCCucuuCGgCGAUGGCGggaauguugAugUGCCGCCa -3'
miRNA:   3'- -GGu---GCgGCUACUGCa--------UugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 64773 0.71 0.487105
Target:  5'- aCAUGCuCGAcuggGACGUAcgcaaggugccGCUGCgCGCCGa -3'
miRNA:   3'- gGUGCG-GCUa---CUGCAU-----------UGACG-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.