Results 81 - 100 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 33328 | 0.69 | 0.601111 |
Target: 5'- gCACGCCcuuuuuGGUGAgCGUAAgcaguuggGCCGCCGg -3' miRNA: 3'- gGUGCGG------CUACU-GCAUUga------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 20125 | 0.69 | 0.576698 |
Target: 5'- aCCGCGCUGAUGGCGgggucuucaggcaccACgGCCuCCGg -3' miRNA: 3'- -GGUGCGGCUACUGCau-------------UGaCGGcGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 61541 | 0.69 | 0.611772 |
Target: 5'- aCGCGagcaCCGgcGGCGaGACaaUGCCGCCGg -3' miRNA: 3'- gGUGC----GGCuaCUGCaUUG--ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 24725 | 0.68 | 0.64382 |
Target: 5'- gCGCGCCGGaacgcguaGACGuUGGCcugGCCGCCc -3' miRNA: 3'- gGUGCGGCUa-------CUGC-AUUGa--CGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 27541 | 0.68 | 0.64382 |
Target: 5'- gUCAcCGCCGGUGGUGgcACcgcgcuccaaUGCCGCCa -3' miRNA: 3'- -GGU-GCGGCUACUGCauUG----------ACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 38025 | 0.68 | 0.642752 |
Target: 5'- aCCGCGUCGAgcagGGCGUGcaugcuggugaGCUGCaucagguugucgaUGCCGu -3' miRNA: 3'- -GGUGCGGCUa---CUGCAU-----------UGACG-------------GCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 10638 | 0.68 | 0.642752 |
Target: 5'- gCugGCCGAgGACGaggAGCUGCCcagugagGUCGa -3' miRNA: 3'- gGugCGGCUaCUGCa--UUGACGG-------CGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 5680 | 0.68 | 0.64382 |
Target: 5'- -aACGCCGGUGGCauc-CUGaCGCCGg -3' miRNA: 3'- ggUGCGGCUACUGcauuGACgGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 61684 | 0.68 | 0.64382 |
Target: 5'- gCACGCCauUGGCGUcGgUGCCGUgGg -3' miRNA: 3'- gGUGCGGcuACUGCAuUgACGGCGgC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 42632 | 0.68 | 0.675777 |
Target: 5'- gCCGcCGCCGGUGcUGg---UGCCGCCa -3' miRNA: 3'- -GGU-GCGGCUACuGCauugACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 15812 | 0.68 | 0.686364 |
Target: 5'- aCCACGCCGAgcGACccgGUGGCgcgcgGCauCGCCa -3' miRNA: 3'- -GGUGCGGCUa-CUG---CAUUGa----CG--GCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 38421 | 0.68 | 0.686364 |
Target: 5'- aCCugGCCGAUGcggGgGUGACcacguccaagGuuGCCGa -3' miRNA: 3'- -GGugCGGCUAC---UgCAUUGa---------CggCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 23041 | 0.68 | 0.686364 |
Target: 5'- gCCACGCCuuGGUGACGgccugGCCaaGCUGg -3' miRNA: 3'- -GGUGCGG--CUACUGCauugaCGG--CGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 3481 | 0.68 | 0.675777 |
Target: 5'- gCCACGCCGGgccgcacCGUGGCcGCCaggacGCCGc -3' miRNA: 3'- -GGUGCGGCUacu----GCAUUGaCGG-----CGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 43923 | 0.68 | 0.66515 |
Target: 5'- uCCugGuuGAUGGCGggcauUGGCUcccaggucucGCCGUCGa -3' miRNA: 3'- -GGugCggCUACUGC-----AUUGA----------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 11151 | 0.68 | 0.66515 |
Target: 5'- gUCGCGCCGucgGugGaccugGCCGCCa -3' miRNA: 3'- -GGUGCGGCua-CugCauugaCGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 62183 | 0.68 | 0.654495 |
Target: 5'- cCCG-GCCGAUGAUGgcgAACacguUGCCGUCc -3' miRNA: 3'- -GGUgCGGCUACUGCa--UUG----ACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 19218 | 0.68 | 0.654495 |
Target: 5'- gCCugaGCCGGUGAguUGUGACUgGCCaGUCGa -3' miRNA: 3'- -GGug-CGGCUACU--GCAUUGA-CGG-CGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 40289 | 0.68 | 0.64382 |
Target: 5'- aCCGCGCCgucguuggugucGAUGGCGUAGCgcccgGCagGCaCGa -3' miRNA: 3'- -GGUGCGG------------CUACUGCAUUGa----CGg-CG-GC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 62610 | 0.68 | 0.66515 |
Target: 5'- aCCGCGCCGA-GGCGc--UUGCUGgCGa -3' miRNA: 3'- -GGUGCGGCUaCUGCauuGACGGCgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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