miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 36897 0.68 0.675777
Target:  5'- gCugGUCugGGUGuCGUAGCUgaccgagccGCCGCCGa -3'
miRNA:   3'- gGugCGG--CUACuGCAUUGA---------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42318 0.68 0.686364
Target:  5'- uUCGCGCCGGUGcCGacACcgGCgGCCa -3'
miRNA:   3'- -GGUGCGGCUACuGCauUGa-CGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 50232 0.68 0.66515
Target:  5'- uCCACGCUGGUGGaGUGc---CCGCCGa -3'
miRNA:   3'- -GGUGCGGCUACUgCAUugacGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 27435 0.68 0.654495
Target:  5'- aUCAUGCCGGUGcccACGgcgauACcGCCGUCGu -3'
miRNA:   3'- -GGUGCGGCUAC---UGCau---UGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31918 0.68 0.654495
Target:  5'- cCCGCcCCGGUGGCGa---UGUCGCCc -3'
miRNA:   3'- -GGUGcGGCUACUGCauugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 59564 0.68 0.654495
Target:  5'- gCugGCCGcgcagGugGUGGacaucGCCGCCGa -3'
miRNA:   3'- gGugCGGCua---CugCAUUga---CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 64442 0.68 0.654495
Target:  5'- aCCGCGCCGAccggguucaagGACGUGACcaaGCUGUa- -3'
miRNA:   3'- -GGUGCGGCUa----------CUGCAUUGa--CGGCGgc -5'
18991 3' -55.6 NC_004684.1 + 24725 0.68 0.64382
Target:  5'- gCGCGCCGGaacgcguaGACGuUGGCcugGCCGCCc -3'
miRNA:   3'- gGUGCGGCUa-------CUGC-AUUGa--CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 27541 0.68 0.64382
Target:  5'- gUCAcCGCCGGUGGUGgcACcgcgcuccaaUGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCUACUGCauUG----------ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 38025 0.68 0.642752
Target:  5'- aCCGCGUCGAgcagGGCGUGcaugcuggugaGCUGCaucagguugucgaUGCCGu -3'
miRNA:   3'- -GGUGCGGCUa---CUGCAU-----------UGACG-------------GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42615 0.68 0.66515
Target:  5'- gCACGCCGAccacGGCGgugAGCgcGCCGuuGa -3'
miRNA:   3'- gGUGCGGCUa---CUGCa--UUGa-CGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 48943 0.68 0.686364
Target:  5'- uUCGCGCac-UGGCGcGACaUGCCGCCc -3'
miRNA:   3'- -GGUGCGgcuACUGCaUUG-ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 41937 0.68 0.675777
Target:  5'- aCCACGCCGAggaacGCGUAcGCgucgGUgGCCa -3'
miRNA:   3'- -GGUGCGGCUac---UGCAU-UGa---CGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 1706 0.68 0.686364
Target:  5'- -uGCGCCGGUGcAgGUGccggaACUGCUGCUc -3'
miRNA:   3'- ggUGCGGCUAC-UgCAU-----UGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 62610 0.68 0.66515
Target:  5'- aCCGCGCCGA-GGCGc--UUGCUGgCGa -3'
miRNA:   3'- -GGUGCGGCUaCUGCauuGACGGCgGC- -5'
18991 3' -55.6 NC_004684.1 + 11593 0.67 0.717791
Target:  5'- gCC-CGCCGGUgcgccuggacGACGgcaccgAGCUgGCCGUCGg -3'
miRNA:   3'- -GGuGCGGCUA----------CUGCa-----UUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42906 0.67 0.717791
Target:  5'- aCCGCcaCCGAcGACG-AAC-GCCGCCa -3'
miRNA:   3'- -GGUGc-GGCUaCUGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 27064 0.67 0.728121
Target:  5'- uCCAgCGCCGGguccgcaGGCGUGGacaucGCCGCCc -3'
miRNA:   3'- -GGU-GCGGCUa------CUGCAUUga---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 16313 0.67 0.736321
Target:  5'- aCCGggcCGCCGGUGAUGUAAUgaccagcgaggaGCgGCUGg -3'
miRNA:   3'- -GGU---GCGGCUACUGCAUUGa-----------CGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42760 0.67 0.726062
Target:  5'- gCCugGCCGGUG-CGauccccgguuugAGCgGCCuGCCGg -3'
miRNA:   3'- -GGugCGGCUACuGCa-----------UUGaCGG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.