miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 47704 0.7 0.548337
Target:  5'- gCCgACGCCGAguaccGACGgcgGugUGCgGCCu -3'
miRNA:   3'- -GG-UGCGGCUa----CUGCa--UugACGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 18964 0.7 0.548337
Target:  5'- gCCGCGCUGGUGcCcUGAgUGCgGCCa -3'
miRNA:   3'- -GGUGCGGCUACuGcAUUgACGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 61183 0.7 0.548337
Target:  5'- gCCGCGUCGAccggUGGCGgcguuGCggagacaaUGCCGCCa -3'
miRNA:   3'- -GGUGCGGCU----ACUGCau---UG--------ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 25884 0.7 0.557747
Target:  5'- gCCA-GuuGGUGACG-AACaccggcgUGCCGCCGg -3'
miRNA:   3'- -GGUgCggCUACUGCaUUG-------ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57902 0.7 0.558796
Target:  5'- gCCGgGCUGAagGugGccgGGCUGaCCGCCGa -3'
miRNA:   3'- -GGUgCGGCUa-CugCa--UUGAC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 41427 0.7 0.558796
Target:  5'- cCCGUGgCGGUGguGCGgcGgUGCCGCCGg -3'
miRNA:   3'- -GGUGCgGCUAC--UGCauUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 53200 0.7 0.569309
Target:  5'- cCUAC-CCGcGUGAUGUGGCcuugcagGCCGCCGc -3'
miRNA:   3'- -GGUGcGGC-UACUGCAUUGa------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 20125 0.69 0.576698
Target:  5'- aCCGCGCUGAUGGCGgggucuucaggcaccACgGCCuCCGg -3'
miRNA:   3'- -GGUGCGGCUACUGCau-------------UGaCGGcGGC- -5'
18991 3' -55.6 NC_004684.1 + 31862 0.69 0.590475
Target:  5'- -gACGCCGu--GCG-AGCUGCCcGCCGa -3'
miRNA:   3'- ggUGCGGCuacUGCaUUGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 54252 0.69 0.590475
Target:  5'- aCCGCGCCGG-GAC--AGCUccucagccagcGCCGCCa -3'
miRNA:   3'- -GGUGCGGCUaCUGcaUUGA-----------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 3981 0.69 0.600046
Target:  5'- uCCugGCCGGUGGCagcuccagucgauGUGcgcccaccacCUGCUGCCGu -3'
miRNA:   3'- -GGugCGGCUACUG-------------CAUu---------GACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 33328 0.69 0.601111
Target:  5'- gCACGCCcuuuuuGGUGAgCGUAAgcaguuggGCCGCCGg -3'
miRNA:   3'- gGUGCGG------CUACU-GCAUUga------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24885 0.69 0.601111
Target:  5'- gCCGCGCCau---CGUGGCUacgagaugGCCGCCGc -3'
miRNA:   3'- -GGUGCGGcuacuGCAUUGA--------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 61541 0.69 0.611772
Target:  5'- aCGCGagcaCCGgcGGCGaGACaaUGCCGCCGg -3'
miRNA:   3'- gGUGC----GGCuaCUGCaUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 6898 0.69 0.611772
Target:  5'- uCCAgGCCGAcGGCGUcgUagugGCCGUCGu -3'
miRNA:   3'- -GGUgCGGCUaCUGCAuuGa---CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57817 0.69 0.62245
Target:  5'- aCCACgGCCuGGUcccGGCGguGCUgGCCGCCGg -3'
miRNA:   3'- -GGUG-CGG-CUA---CUGCauUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 63053 0.69 0.62245
Target:  5'- aCCGCcuaacgGuuGGUGGCGgcuACcgUGCCGCCGu -3'
miRNA:   3'- -GGUG------CggCUACUGCau-UG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 25404 0.69 0.62245
Target:  5'- aUACGCCGccagggccGACG-AACcGCCGCCGc -3'
miRNA:   3'- gGUGCGGCua------CUGCaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57136 0.69 0.62245
Target:  5'- aCCGCGCUGGUGcCGUGGCccaccgUGaCCGaCCa -3'
miRNA:   3'- -GGUGCGGCUACuGCAUUG------AC-GGC-GGc -5'
18991 3' -55.6 NC_004684.1 + 62093 0.69 0.633135
Target:  5'- gCGCGUCGu---CGUAGCUGgCGCUGg -3'
miRNA:   3'- gGUGCGGCuacuGCAUUGACgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.