miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 43923 0.68 0.66515
Target:  5'- uCCugGuuGAUGGCGggcauUGGCUcccaggucucGCCGUCGa -3'
miRNA:   3'- -GGugCggCUACUGC-----AUUGA----------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 62610 0.68 0.66515
Target:  5'- aCCGCGCCGA-GGCGc--UUGCUGgCGa -3'
miRNA:   3'- -GGUGCGGCUaCUGCauuGACGGCgGC- -5'
18991 3' -55.6 NC_004684.1 + 66974 0.68 0.669405
Target:  5'- gCCGCGCCGaAggucgccaccggcgcUGACGUGcuggccagcGCggucgagGCCGCCa -3'
miRNA:   3'- -GGUGCGGC-U---------------ACUGCAU---------UGa------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 36897 0.68 0.675777
Target:  5'- gCugGUCugGGUGuCGUAGCUgaccgagccGCCGCCGa -3'
miRNA:   3'- gGugCGG--CUACuGCAUUGA---------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 41937 0.68 0.675777
Target:  5'- aCCACGCCGAggaacGCGUAcGCgucgGUgGCCa -3'
miRNA:   3'- -GGUGCGGCUac---UGCAU-UGa---CGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 42632 0.68 0.675777
Target:  5'- gCCGcCGCCGGUGcUGg---UGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCUACuGCauugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 3481 0.68 0.675777
Target:  5'- gCCACGCCGGgccgcacCGUGGCcGCCaggacGCCGc -3'
miRNA:   3'- -GGUGCGGCUacu----GCAUUGaCGG-----CGGC- -5'
18991 3' -55.6 NC_004684.1 + 13067 0.68 0.686364
Target:  5'- cCgGCGCuCGGUGuuGc--CUGCCGCCGc -3'
miRNA:   3'- -GgUGCG-GCUACugCauuGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 1706 0.68 0.686364
Target:  5'- -uGCGCCGGUGcAgGUGccggaACUGCUGCUc -3'
miRNA:   3'- ggUGCGGCUAC-UgCAU-----UGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 61014 0.68 0.686364
Target:  5'- aCugGCCGA-GGCGUGcgacGCcGUgGCCGa -3'
miRNA:   3'- gGugCGGCUaCUGCAU----UGaCGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42318 0.68 0.686364
Target:  5'- uUCGCGCCGGUGcCGacACcgGCgGCCa -3'
miRNA:   3'- -GGUGCGGCUACuGCauUGa-CGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 23041 0.68 0.686364
Target:  5'- gCCACGCCuuGGUGACGgccugGCCaaGCUGg -3'
miRNA:   3'- -GGUGCGG--CUACUGCauugaCGG--CGGC- -5'
18991 3' -55.6 NC_004684.1 + 48943 0.68 0.686364
Target:  5'- uUCGCGCac-UGGCGcGACaUGCCGCCc -3'
miRNA:   3'- -GGUGCGgcuACUGCaUUG-ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 38421 0.68 0.686364
Target:  5'- aCCugGCCGAUGcggGgGUGACcacguccaagGuuGCCGa -3'
miRNA:   3'- -GGugCGGCUAC---UgCAUUGa---------CggCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15812 0.68 0.686364
Target:  5'- aCCACGCCGAgcGACccgGUGGCgcgcgGCauCGCCa -3'
miRNA:   3'- -GGUGCGGCUa-CUG---CAUUGa----CG--GCGGc -5'
18991 3' -55.6 NC_004684.1 + 49737 0.67 0.696902
Target:  5'- uCCACGCCG-UGGuCGguGCUccuggaGCCGCUGg -3'
miRNA:   3'- -GGUGCGGCuACU-GCauUGA------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26553 0.67 0.696902
Target:  5'- gCACGCUGuc-GCGgccaGGCgUGCCGCCGu -3'
miRNA:   3'- gGUGCGGCuacUGCa---UUG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 36737 0.67 0.696902
Target:  5'- aCCuguuCGCCGucccGGCGcUGAC-GCCGCCa -3'
miRNA:   3'- -GGu---GCGGCua--CUGC-AUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 25121 0.67 0.696902
Target:  5'- gCCACGUCGAUGcCGccuccAGCUGCa-CCGg -3'
miRNA:   3'- -GGUGCGGCUACuGCa----UUGACGgcGGC- -5'
18991 3' -55.6 NC_004684.1 + 5962 0.67 0.696902
Target:  5'- gCCGCGCCGGUGA-GcGACcgGCCGagcaagucCCGg -3'
miRNA:   3'- -GGUGCGGCUACUgCaUUGa-CGGC--------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.