Results 121 - 140 of 187 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 2339 | 0.67 | 0.696902 |
Target: 5'- gCCGCGCUGAUcaGCGUGGCguUGCgGuuGg -3' miRNA: 3'- -GGUGCGGCUAc-UGCAUUG--ACGgCggC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 6521 | 0.67 | 0.696902 |
Target: 5'- gCCAaGCgCGAaGGCGUucacGCcGCCGCCGa -3' miRNA: 3'- -GGUgCG-GCUaCUGCAu---UGaCGGCGGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 36737 | 0.67 | 0.696902 |
Target: 5'- aCCuguuCGCCGucccGGCGcUGAC-GCCGCCa -3' miRNA: 3'- -GGu---GCGGCua--CUGC-AUUGaCGGCGGc -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 18330 | 0.67 | 0.707382 |
Target: 5'- gCACGCCGGUGcCGcccccGgaGCCGaCCGg -3' miRNA: 3'- gGUGCGGCUACuGCau---UgaCGGC-GGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 25216 | 0.67 | 0.707382 |
Target: 5'- gCGCGCUGGUGAUGgcGgUGaCCaCCGg -3' miRNA: 3'- gGUGCGGCUACUGCauUgAC-GGcGGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 23131 | 0.67 | 0.707382 |
Target: 5'- gCCAgGCCGucaccaaGGCGUGGCaggaaaucGCUGCCGa -3' miRNA: 3'- -GGUgCGGCua-----CUGCAUUGa-------CGGCGGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 11593 | 0.67 | 0.717791 |
Target: 5'- gCC-CGCCGGUgcgccuggacGACGgcaccgAGCUgGCCGUCGg -3' miRNA: 3'- -GGuGCGGCUA----------CUGCa-----UUGA-CGGCGGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 65404 | 0.67 | 0.717791 |
Target: 5'- -gGCGCUGGccGugGUGcacaGCgagGCCGCCGu -3' miRNA: 3'- ggUGCGGCUa-CugCAU----UGa--CGGCGGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 2194 | 0.67 | 0.717791 |
Target: 5'- aCCACGCCGcgc-CGUAguGCUG-CGCCa -3' miRNA: 3'- -GGUGCGGCuacuGCAU--UGACgGCGGc -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 12205 | 0.67 | 0.717791 |
Target: 5'- uCCucaGCCGggGucggggguuGCGUGAUgGCCGCCGc -3' miRNA: 3'- -GGug-CGGCuaC---------UGCAUUGaCGGCGGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 42906 | 0.67 | 0.717791 |
Target: 5'- aCCGCcaCCGAcGACG-AAC-GCCGCCa -3' miRNA: 3'- -GGUGc-GGCUaCUGCaUUGaCGGCGGc -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 43158 | 0.67 | 0.717791 |
Target: 5'- cCUACaCCGAcgagGACGUggUcGCCGCCc -3' miRNA: 3'- -GGUGcGGCUa---CUGCAuuGaCGGCGGc -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 19410 | 0.67 | 0.717791 |
Target: 5'- gCCACGgCGgcGGCGUA--UGCgGCCu -3' miRNA: 3'- -GGUGCgGCuaCUGCAUugACGgCGGc -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 49335 | 0.67 | 0.717791 |
Target: 5'- aCGCGCCGcUGugGggcGACgUGCCGacgcCCGg -3' miRNA: 3'- gGUGCGGCuACugCa--UUG-ACGGC----GGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 10600 | 0.67 | 0.717791 |
Target: 5'- gCGCGCgaGGUG-CGcAACUGCCGuuGc -3' miRNA: 3'- gGUGCGg-CUACuGCaUUGACGGCggC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 6019 | 0.67 | 0.717791 |
Target: 5'- aCCGC-CCGGUGGCc-AGCgcgGCCaGCCGg -3' miRNA: 3'- -GGUGcGGCUACUGcaUUGa--CGG-CGGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 54304 | 0.67 | 0.717791 |
Target: 5'- gCugGCCGAccucGGCcccgAGCagGCCGCCGg -3' miRNA: 3'- gGugCGGCUa---CUGca--UUGa-CGGCGGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 42760 | 0.67 | 0.726062 |
Target: 5'- gCCugGCCGGUG-CGauccccgguuugAGCgGCCuGCCGg -3' miRNA: 3'- -GGugCGGCUACuGCa-----------UUGaCGG-CGGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 52723 | 0.67 | 0.728121 |
Target: 5'- gCAUGCCGGUGAUGgcGACgUGCCcggcaCCGa -3' miRNA: 3'- gGUGCGGCUACUGCa-UUG-ACGGc----GGC- -5' |
|||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 27064 | 0.67 | 0.728121 |
Target: 5'- uCCAgCGCCGGguccgcaGGCGUGGacaucGCCGCCc -3' miRNA: 3'- -GGU-GCGGCUa------CUGCAUUga---CGGCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home