Results 81 - 100 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 41937 | 0.68 | 0.675777 |
Target: 5'- aCCACGCCGAggaacGCGUAcGCgucgGUgGCCa -3' miRNA: 3'- -GGUGCGGCUac---UGCAU-UGa---CGgCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 42632 | 0.68 | 0.675777 |
Target: 5'- gCCGcCGCCGGUGcUGg---UGCCGCCa -3' miRNA: 3'- -GGU-GCGGCUACuGCauugACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 36897 | 0.68 | 0.675777 |
Target: 5'- gCugGUCugGGUGuCGUAGCUgaccgagccGCCGCCGa -3' miRNA: 3'- gGugCGG--CUACuGCAUUGA---------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 3481 | 0.68 | 0.675777 |
Target: 5'- gCCACGCCGGgccgcacCGUGGCcGCCaggacGCCGc -3' miRNA: 3'- -GGUGCGGCUacu----GCAUUGaCGG-----CGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 66974 | 0.68 | 0.669405 |
Target: 5'- gCCGCGCCGaAggucgccaccggcgcUGACGUGcuggccagcGCggucgagGCCGCCa -3' miRNA: 3'- -GGUGCGGC-U---------------ACUGCAU---------UGa------CGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 11151 | 0.68 | 0.66515 |
Target: 5'- gUCGCGCCGucgGugGaccugGCCGCCa -3' miRNA: 3'- -GGUGCGGCua-CugCauugaCGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 43923 | 0.68 | 0.66515 |
Target: 5'- uCCugGuuGAUGGCGggcauUGGCUcccaggucucGCCGUCGa -3' miRNA: 3'- -GGugCggCUACUGC-----AUUGA----------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 50232 | 0.68 | 0.66515 |
Target: 5'- uCCACGCUGGUGGaGUGc---CCGCCGa -3' miRNA: 3'- -GGUGCGGCUACUgCAUugacGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 62610 | 0.68 | 0.66515 |
Target: 5'- aCCGCGCCGA-GGCGc--UUGCUGgCGa -3' miRNA: 3'- -GGUGCGGCUaCUGCauuGACGGCgGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 42615 | 0.68 | 0.66515 |
Target: 5'- gCACGCCGAccacGGCGgugAGCgcGCCGuuGa -3' miRNA: 3'- gGUGCGGCUa---CUGCa--UUGa-CGGCggC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 10973 | 0.68 | 0.66515 |
Target: 5'- aCCGCGUCGGUGaACGU-GCggaagGUcuCGCCGg -3' miRNA: 3'- -GGUGCGGCUAC-UGCAuUGa----CG--GCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 64442 | 0.68 | 0.654495 |
Target: 5'- aCCGCGCCGAccggguucaagGACGUGACcaaGCUGUa- -3' miRNA: 3'- -GGUGCGGCUa----------CUGCAUUGa--CGGCGgc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 62183 | 0.68 | 0.654495 |
Target: 5'- cCCG-GCCGAUGAUGgcgAACacguUGCCGUCc -3' miRNA: 3'- -GGUgCGGCUACUGCa--UUG----ACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 19218 | 0.68 | 0.654495 |
Target: 5'- gCCugaGCCGGUGAguUGUGACUgGCCaGUCGa -3' miRNA: 3'- -GGug-CGGCUACU--GCAUUGA-CGG-CGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 31918 | 0.68 | 0.654495 |
Target: 5'- cCCGCcCCGGUGGCGa---UGUCGCCc -3' miRNA: 3'- -GGUGcGGCUACUGCauugACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 59564 | 0.68 | 0.654495 |
Target: 5'- gCugGCCGcgcagGugGUGGacaucGCCGCCGa -3' miRNA: 3'- gGugCGGCua---CugCAUUga---CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 27435 | 0.68 | 0.654495 |
Target: 5'- aUCAUGCCGGUGcccACGgcgauACcGCCGUCGu -3' miRNA: 3'- -GGUGCGGCUAC---UGCau---UGaCGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 40289 | 0.68 | 0.64382 |
Target: 5'- aCCGCGCCgucguuggugucGAUGGCGUAGCgcccgGCagGCaCGa -3' miRNA: 3'- -GGUGCGG------------CUACUGCAUUGa----CGg-CG-GC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 5680 | 0.68 | 0.64382 |
Target: 5'- -aACGCCGGUGGCauc-CUGaCGCCGg -3' miRNA: 3'- ggUGCGGCUACUGcauuGACgGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 61684 | 0.68 | 0.64382 |
Target: 5'- gCACGCCauUGGCGUcGgUGCCGUgGg -3' miRNA: 3'- gGUGCGGcuACUGCAuUgACGGCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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