miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 20416 0.71 0.4971
Target:  5'- gCgACGCCGAUcuCGaUGGCcGCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUAcuGC-AUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22285 0.66 0.806628
Target:  5'- cCUGCGCCaguccGAaGGCGgucGCcGCCGCCGu -3'
miRNA:   3'- -GGUGCGG-----CUaCUGCau-UGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22324 0.66 0.797313
Target:  5'- gCGCGuuGAUcGCGcGGgUGCCGUCGc -3'
miRNA:   3'- gGUGCggCUAcUGCaUUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22376 0.66 0.806628
Target:  5'- aCCGcCGCCGcgcgGGCcuUGGCcGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCua--CUGc-AUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 22523 0.73 0.393077
Target:  5'- gCCGCGCCGAcggcgaUGGCGUugaggcccagcgGGCUGguuaggaauCCGCCGa -3'
miRNA:   3'- -GGUGCGGCU------ACUGCA------------UUGAC---------GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22951 0.66 0.768432
Target:  5'- aCACGCCGAaGGCcagaAGCgcgccaacGCCGCCa -3'
miRNA:   3'- gGUGCGGCUaCUGca--UUGa-------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 23041 0.68 0.686364
Target:  5'- gCCACGCCuuGGUGACGgccugGCCaaGCUGg -3'
miRNA:   3'- -GGUGCGG--CUACUGCauugaCGG--CGGC- -5'
18991 3' -55.6 NC_004684.1 + 23131 0.67 0.707382
Target:  5'- gCCAgGCCGucaccaaGGCGUGGCaggaaaucGCUGCCGa -3'
miRNA:   3'- -GGUgCGGCua-----CUGCAUUGa-------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24159 0.73 0.384337
Target:  5'- gUCACGCCGuUGuAgGUGACcgUGCCGUCGg -3'
miRNA:   3'- -GGUGCGGCuAC-UgCAUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24725 0.68 0.64382
Target:  5'- gCGCGCCGGaacgcguaGACGuUGGCcugGCCGCCc -3'
miRNA:   3'- gGUGCGGCUa-------CUGC-AUUGa--CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 24885 0.69 0.601111
Target:  5'- gCCGCGCCau---CGUGGCUacgagaugGCCGCCGc -3'
miRNA:   3'- -GGUGCGGcuacuGCAUUGA--------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24934 0.73 0.367248
Target:  5'- aCgGC-CCGGUGGCGcUAccGCUGCCGCCc -3'
miRNA:   3'- -GgUGcGGCUACUGC-AU--UGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 25121 0.67 0.696902
Target:  5'- gCCACGUCGAUGcCGccuccAGCUGCa-CCGg -3'
miRNA:   3'- -GGUGCGGCUACuGCa----UUGACGgcGGC- -5'
18991 3' -55.6 NC_004684.1 + 25216 0.67 0.707382
Target:  5'- gCGCGCUGGUGAUGgcGgUGaCCaCCGg -3'
miRNA:   3'- gGUGCGGCUACUGCauUgAC-GGcGGC- -5'
18991 3' -55.6 NC_004684.1 + 25404 0.69 0.62245
Target:  5'- aUACGCCGccagggccGACG-AACcGCCGCCGc -3'
miRNA:   3'- gGUGCGGCua------CUGCaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 25792 0.66 0.778205
Target:  5'- gCACGCCGGUGuuCGUcaccAACUG--GCCGg -3'
miRNA:   3'- gGUGCGGCUACu-GCA----UUGACggCGGC- -5'
18991 3' -55.6 NC_004684.1 + 25884 0.7 0.557747
Target:  5'- gCCA-GuuGGUGACG-AACaccggcgUGCCGCCGg -3'
miRNA:   3'- -GGUgCggCUACUGCaUUG-------ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 25913 0.7 0.53794
Target:  5'- gC-CGCCGAUGcCGUucugGCCGCCa -3'
miRNA:   3'- gGuGCGGCUACuGCAuugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 25951 0.75 0.319188
Target:  5'- gCCugGCCGAgGcCGUugAACagGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUaCuGCA--UUGa-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26156 0.69 0.633135
Target:  5'- gUACGCCGAgguguUGGCcucgAACUcGCCGCCc -3'
miRNA:   3'- gGUGCGGCU-----ACUGca--UUGA-CGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.