miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 42615 0.68 0.66515
Target:  5'- gCACGCCGAccacGGCGgugAGCgcGCCGuuGa -3'
miRNA:   3'- gGUGCGGCUa---CUGCa--UUGa-CGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 42632 0.68 0.675777
Target:  5'- gCCGcCGCCGGUGcUGg---UGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCUACuGCauugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42640 0.69 0.633135
Target:  5'- gCCACGCCGAaGcCG-AAC-GCCGUCa -3'
miRNA:   3'- -GGUGCGGCUaCuGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42760 0.67 0.726062
Target:  5'- gCCugGCCGGUG-CGauccccgguuugAGCgGCCuGCCGg -3'
miRNA:   3'- -GGugCGGCUACuGCa-----------UUGaCGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 42790 0.72 0.429296
Target:  5'- gUCACGCCGGUGACcagaucguugAACUGguuggccaCCGCCGu -3'
miRNA:   3'- -GGUGCGGCUACUGca--------UUGAC--------GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42906 0.67 0.717791
Target:  5'- aCCGCcaCCGAcGACG-AAC-GCCGCCa -3'
miRNA:   3'- -GGUGc-GGCUaCUGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 43158 0.67 0.717791
Target:  5'- cCUACaCCGAcgagGACGUggUcGCCGCCc -3'
miRNA:   3'- -GGUGcGGCUa---CUGCAuuGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 43564 0.66 0.787835
Target:  5'- gCC-CGCCGc--ACcu-GCUGCCGCCGc -3'
miRNA:   3'- -GGuGCGGCuacUGcauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 43923 0.68 0.66515
Target:  5'- uCCugGuuGAUGGCGggcauUGGCUcccaggucucGCCGUCGa -3'
miRNA:   3'- -GGugCggCUACUGC-----AUUGA----------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 43959 0.71 0.477205
Target:  5'- -uGCGCCGAacaUGGCGcacaUGCUGCCGa -3'
miRNA:   3'- ggUGCGGCU---ACUGCauugACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 44368 0.71 0.4971
Target:  5'- gCgACGCCG-UGcACGagugGugUGCCGCCGu -3'
miRNA:   3'- -GgUGCGGCuAC-UGCa---UugACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 45306 0.74 0.334668
Target:  5'- aCCaaGCGCCGcaugGACGc-GCUGCCGCUGg -3'
miRNA:   3'- -GG--UGCGGCua--CUGCauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 45852 0.73 0.393077
Target:  5'- gCCGCGCUcguuGAUGGCGUcggcgaucAugUGCgCGCCGu -3'
miRNA:   3'- -GGUGCGG----CUACUGCA--------UugACG-GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 46330 0.67 0.696902
Target:  5'- aCCACGCCGGUGcCGaaGGCUuccaCGCCa -3'
miRNA:   3'- -GGUGCGGCUACuGCa-UUGAcg--GCGGc -5'
18991 3' -55.6 NC_004684.1 + 46509 0.71 0.507187
Target:  5'- gCCAgcuUGCCGAUGACGgugGACUuGCCugcaCCGg -3'
miRNA:   3'- -GGU---GCGGCUACUGCa--UUGA-CGGc---GGC- -5'
18991 3' -55.6 NC_004684.1 + 47131 0.66 0.758526
Target:  5'- -uGCGCCucGGUGGCGUAgGCgGCC-CCGg -3'
miRNA:   3'- ggUGCGG--CUACUGCAU-UGaCGGcGGC- -5'
18991 3' -55.6 NC_004684.1 + 47704 0.7 0.548337
Target:  5'- gCCgACGCCGAguaccGACGgcgGugUGCgGCCu -3'
miRNA:   3'- -GG-UGCGGCUa----CUGCa--UugACGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 48525 0.72 0.420057
Target:  5'- cCCuCGCgGAUGAUGUAGUUGCCGaCCu -3'
miRNA:   3'- -GGuGCGgCUACUGCAUUGACGGC-GGc -5'
18991 3' -55.6 NC_004684.1 + 48790 0.78 0.209138
Target:  5'- gCGgGCCGAUGAUGcagGACagGCCGCCGu -3'
miRNA:   3'- gGUgCGGCUACUGCa--UUGa-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 48943 0.68 0.686364
Target:  5'- uUCGCGCac-UGGCGcGACaUGCCGCCc -3'
miRNA:   3'- -GGUGCGgcuACUGCaUUG-ACGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.