Results 41 - 60 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 51048 | 0.66 | 0.768432 |
Target: 5'- gCCAcCGCCGGUGACGa---UG-CGCCc -3' miRNA: 3'- -GGU-GCGGCUACUGCauugACgGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 50697 | 0.79 | 0.160945 |
Target: 5'- gCCACGCCGAUGACcc-GCcGaCCGCCGa -3' miRNA: 3'- -GGUGCGGCUACUGcauUGaC-GGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 50232 | 0.68 | 0.66515 |
Target: 5'- uCCACGCUGGUGGaGUGc---CCGCCGa -3' miRNA: 3'- -GGUGCGGCUACUgCAUugacGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 50132 | 0.66 | 0.797313 |
Target: 5'- uCCugGCCug-GAgccaggcacCGgccacGCUGCCGCCGa -3' miRNA: 3'- -GGugCGGcuaCU---------GCau---UGACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 49841 | 0.73 | 0.410939 |
Target: 5'- cCCGCGCUGGUGcgcucCGUGccgaGCgUGCCGCUGa -3' miRNA: 3'- -GGUGCGGCUACu----GCAU----UG-ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 49737 | 0.67 | 0.696902 |
Target: 5'- uCCACGCCG-UGGuCGguGCUccuggaGCCGCUGg -3' miRNA: 3'- -GGUGCGGCuACU-GCauUGA------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 49335 | 0.67 | 0.717791 |
Target: 5'- aCGCGCCGcUGugGggcGACgUGCCGacgcCCGg -3' miRNA: 3'- gGUGCGGCuACugCa--UUG-ACGGC----GGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 48943 | 0.68 | 0.686364 |
Target: 5'- uUCGCGCac-UGGCGcGACaUGCCGCCc -3' miRNA: 3'- -GGUGCGgcuACUGCaUUG-ACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 48790 | 0.78 | 0.209138 |
Target: 5'- gCGgGCCGAUGAUGcagGACagGCCGCCGu -3' miRNA: 3'- gGUgCGGCUACUGCa--UUGa-CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 48525 | 0.72 | 0.420057 |
Target: 5'- cCCuCGCgGAUGAUGUAGUUGCCGaCCu -3' miRNA: 3'- -GGuGCGgCUACUGCAUUGACGGC-GGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 47704 | 0.7 | 0.548337 |
Target: 5'- gCCgACGCCGAguaccGACGgcgGugUGCgGCCu -3' miRNA: 3'- -GG-UGCGGCUa----CUGCa--UugACGgCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 47131 | 0.66 | 0.758526 |
Target: 5'- -uGCGCCucGGUGGCGUAgGCgGCC-CCGg -3' miRNA: 3'- ggUGCGG--CUACUGCAU-UGaCGGcGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 46509 | 0.71 | 0.507187 |
Target: 5'- gCCAgcuUGCCGAUGACGgugGACUuGCCugcaCCGg -3' miRNA: 3'- -GGU---GCGGCUACUGCa--UUGA-CGGc---GGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 46330 | 0.67 | 0.696902 |
Target: 5'- aCCACGCCGGUGcCGaaGGCUuccaCGCCa -3' miRNA: 3'- -GGUGCGGCUACuGCa-UUGAcg--GCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 45852 | 0.73 | 0.393077 |
Target: 5'- gCCGCGCUcguuGAUGGCGUcggcgaucAugUGCgCGCCGu -3' miRNA: 3'- -GGUGCGG----CUACUGCA--------UugACG-GCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 45306 | 0.74 | 0.334668 |
Target: 5'- aCCaaGCGCCGcaugGACGc-GCUGCCGCUGg -3' miRNA: 3'- -GG--UGCGGCua--CUGCauUGACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 44368 | 0.71 | 0.4971 |
Target: 5'- gCgACGCCG-UGcACGagugGugUGCCGCCGu -3' miRNA: 3'- -GgUGCGGCuAC-UGCa---UugACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 43959 | 0.71 | 0.477205 |
Target: 5'- -uGCGCCGAacaUGGCGcacaUGCUGCCGa -3' miRNA: 3'- ggUGCGGCU---ACUGCauugACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 43923 | 0.68 | 0.66515 |
Target: 5'- uCCugGuuGAUGGCGggcauUGGCUcccaggucucGCCGUCGa -3' miRNA: 3'- -GGugCggCUACUGC-----AUUGA----------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 43564 | 0.66 | 0.787835 |
Target: 5'- gCC-CGCCGc--ACcu-GCUGCCGCCGc -3' miRNA: 3'- -GGuGCGGCuacUGcauUGACGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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