miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 43158 0.67 0.717791
Target:  5'- cCUACaCCGAcgagGACGUggUcGCCGCCc -3'
miRNA:   3'- -GGUGcGGCUa---CUGCAuuGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42906 0.67 0.717791
Target:  5'- aCCGCcaCCGAcGACG-AAC-GCCGCCa -3'
miRNA:   3'- -GGUGc-GGCUaCUGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42790 0.72 0.429296
Target:  5'- gUCACGCCGGUGACcagaucguugAACUGguuggccaCCGCCGu -3'
miRNA:   3'- -GGUGCGGCUACUGca--------UUGAC--------GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42760 0.67 0.726062
Target:  5'- gCCugGCCGGUG-CGauccccgguuugAGCgGCCuGCCGg -3'
miRNA:   3'- -GGugCGGCUACuGCa-----------UUGaCGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 42640 0.69 0.633135
Target:  5'- gCCACGCCGAaGcCG-AAC-GCCGUCa -3'
miRNA:   3'- -GGUGCGGCUaCuGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42632 0.68 0.675777
Target:  5'- gCCGcCGCCGGUGcUGg---UGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCUACuGCauugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42615 0.68 0.66515
Target:  5'- gCACGCCGAccacGGCGgugAGCgcGCCGuuGa -3'
miRNA:   3'- gGUGCGGCUa---CUGCa--UUGa-CGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 42318 0.68 0.686364
Target:  5'- uUCGCGCCGGUGcCGacACcgGCgGCCa -3'
miRNA:   3'- -GGUGCGGCUACuGCauUGa-CGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 42202 0.69 0.633135
Target:  5'- gCCGuggaGCUGGUGGCc-GACgugGCCGCCGg -3'
miRNA:   3'- -GGUg---CGGCUACUGcaUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 41937 0.68 0.675777
Target:  5'- aCCACGCCGAggaacGCGUAcGCgucgGUgGCCa -3'
miRNA:   3'- -GGUGCGGCUac---UGCAU-UGa---CGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 41427 0.7 0.558796
Target:  5'- cCCGUGgCGGUGguGCGgcGgUGCCGCCGg -3'
miRNA:   3'- -GGUGCgGCUAC--UGCauUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 40947 0.66 0.806628
Target:  5'- gCACGCCGcUG-CG--GCUGCCGUUc -3'
miRNA:   3'- gGUGCGGCuACuGCauUGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 40289 0.68 0.64382
Target:  5'- aCCGCGCCgucguuggugucGAUGGCGUAGCgcccgGCagGCaCGa -3'
miRNA:   3'- -GGUGCGG------------CUACUGCAUUGa----CGg-CG-GC- -5'
18991 3' -55.6 NC_004684.1 + 39993 0.71 0.477205
Target:  5'- aCCugGUCGGUGugGUGGCUuaCCaGCCu -3'
miRNA:   3'- -GGugCGGCUACugCAUUGAc-GG-CGGc -5'
18991 3' -55.6 NC_004684.1 + 39778 0.66 0.768432
Target:  5'- uCCugGCCGuucucGAUgcgcugGUAGCUGC-GCCGg -3'
miRNA:   3'- -GGugCGGCua---CUG------CAUUGACGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 38563 0.7 0.53794
Target:  5'- -gACGCCGGUGccugccuugucgGCGUGAUcgcGCCGUCGg -3'
miRNA:   3'- ggUGCGGCUAC------------UGCAUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 38421 0.68 0.686364
Target:  5'- aCCugGCCGAUGcggGgGUGACcacguccaagGuuGCCGa -3'
miRNA:   3'- -GGugCGGCUAC---UgCAUUGa---------CggCGGC- -5'
18991 3' -55.6 NC_004684.1 + 38025 0.68 0.642752
Target:  5'- aCCGCGUCGAgcagGGCGUGcaugcuggugaGCUGCaucagguugucgaUGCCGu -3'
miRNA:   3'- -GGUGCGGCUa---CUGCAU-----------UGACG-------------GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 37620 0.66 0.787835
Target:  5'- cCCAUGCCGAacgccgucggUG-CGcUGGCcaugGCCGCCc -3'
miRNA:   3'- -GGUGCGGCU----------ACuGC-AUUGa---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 36897 0.68 0.675777
Target:  5'- gCugGUCugGGUGuCGUAGCUgaccgagccGCCGCCGa -3'
miRNA:   3'- gGugCGG--CUACuGCAUUGA---------CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.