miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 36737 0.67 0.696902
Target:  5'- aCCuguuCGCCGucccGGCGcUGAC-GCCGCCa -3'
miRNA:   3'- -GGu---GCGGCua--CUGC-AUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 33892 0.71 0.507187
Target:  5'- gCCgACGCCGAaccgcuCGaUGACuUGCCGCCGa -3'
miRNA:   3'- -GG-UGCGGCUacu---GC-AUUG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 33818 0.66 0.772357
Target:  5'- gCCGCGCUGcgucgaGUAguucgggccaccgccGCUGCCGCUGg -3'
miRNA:   3'- -GGUGCGGCuacug-CAU---------------UGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 33657 0.66 0.806628
Target:  5'- cCCuCGCCGGgcaUGGCGUcGCUGUgcaccaccaccgCGCUGg -3'
miRNA:   3'- -GGuGCGGCU---ACUGCAuUGACG------------GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 33328 0.69 0.601111
Target:  5'- gCACGCCcuuuuuGGUGAgCGUAAgcaguuggGCCGCCGg -3'
miRNA:   3'- gGUGCGG------CUACU-GCAUUga------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 32766 0.71 0.51736
Target:  5'- --uUGCCGAgGcCGUAGCcaUGCCGCCGc -3'
miRNA:   3'- gguGCGGCUaCuGCAUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 32509 0.66 0.787835
Target:  5'- gCCACGCCc--GAgGUGccGCUGCUGuuGc -3'
miRNA:   3'- -GGUGCGGcuaCUgCAU--UGACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 31918 0.68 0.654495
Target:  5'- cCCGCcCCGGUGGCGa---UGUCGCCc -3'
miRNA:   3'- -GGUGcGGCUACUGCauugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 31862 0.69 0.590475
Target:  5'- -gACGCCGu--GCG-AGCUGCCcGCCGa -3'
miRNA:   3'- ggUGCGGCuacUGCaUUGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 31852 0.66 0.797313
Target:  5'- uCgGgGUCGAUGGCGUAcaggccgacguACaggGCCGUCGg -3'
miRNA:   3'- -GgUgCGGCUACUGCAU-----------UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31719 0.77 0.231675
Target:  5'- uUCAuCGCCGGUGGCGacacACcGCCGCCGa -3'
miRNA:   3'- -GGU-GCGGCUACUGCau--UGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31400 0.66 0.805704
Target:  5'- uCCugGCUGGUcugcccggucaccGAgGUAcgGCgguaGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUA-------------CUgCAU--UGa---CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31224 0.72 0.429296
Target:  5'- gCCgACGCCGGUGACGccAUUGCCGauGu -3'
miRNA:   3'- -GG-UGCGGCUACUGCauUGACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 30995 0.72 0.429296
Target:  5'- -gACGCUGAUGGCGcAGCUGggccugaCGCCGa -3'
miRNA:   3'- ggUGCGGCUACUGCaUUGACg------GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 29543 0.66 0.787835
Target:  5'- aCCAgGUCGAUGuCG-AACcgGUCGCCc -3'
miRNA:   3'- -GGUgCGGCUACuGCaUUGa-CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 29365 0.67 0.748499
Target:  5'- ---aGCUGGUGAUGgugAGCUGUCGgCGg -3'
miRNA:   3'- ggugCGGCUACUGCa--UUGACGGCgGC- -5'
18991 3' -55.6 NC_004684.1 + 28896 0.71 0.467406
Target:  5'- gCGCGCCG-UGGCG--ACcGCCGCUGa -3'
miRNA:   3'- gGUGCGGCuACUGCauUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 28570 0.7 0.53794
Target:  5'- cCCGCcaCCGGUGuGCGgcgGCUGCCuGCCGg -3'
miRNA:   3'- -GGUGc-GGCUAC-UGCau-UGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 28392 0.71 0.467406
Target:  5'- uCCucuCGCCGuacGCGUAcgUGCCGCCGg -3'
miRNA:   3'- -GGu--GCGGCuacUGCAUugACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 28052 0.75 0.289154
Target:  5'- aUCAUGCCGGUGGucggccccggcggUGUGGCcggGCCGCCGc -3'
miRNA:   3'- -GGUGCGGCUACU-------------GCAUUGa--CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.