miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 27744 0.72 0.448127
Target:  5'- cUCGCGCCgucGAUGACGcAGgUGUCGCCc -3'
miRNA:   3'- -GGUGCGG---CUACUGCaUUgACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 61517 0.72 0.448127
Target:  5'- gCGCGCCagcaGUGACGUGcaggcgcugGCgUGCCGCUGg -3'
miRNA:   3'- gGUGCGGc---UACUGCAU---------UG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 41427 0.7 0.558796
Target:  5'- cCCGUGgCGGUGguGCGgcGgUGCCGCCGg -3'
miRNA:   3'- -GGUGCgGCUAC--UGCauUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31862 0.69 0.590475
Target:  5'- -gACGCCGu--GCG-AGCUGCCcGCCGa -3'
miRNA:   3'- ggUGCGGCuacUGCaUUGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 54252 0.69 0.590475
Target:  5'- aCCGCGCCGG-GAC--AGCUccucagccagcGCCGCCa -3'
miRNA:   3'- -GGUGCGGCUaCUGcaUUGA-----------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 3981 0.69 0.600046
Target:  5'- uCCugGCCGGUGGCagcuccagucgauGUGcgcccaccacCUGCUGCCGu -3'
miRNA:   3'- -GGugCGGCUACUG-------------CAUu---------GACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24885 0.69 0.601111
Target:  5'- gCCGCGCCau---CGUGGCUacgagaugGCCGCCGc -3'
miRNA:   3'- -GGUGCGGcuacuGCAUUGA--------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57817 0.69 0.62245
Target:  5'- aCCACgGCCuGGUcccGGCGguGCUgGCCGCCGg -3'
miRNA:   3'- -GGUG-CGG-CUA---CUGCauUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 63053 0.69 0.62245
Target:  5'- aCCGCcuaacgGuuGGUGGCGgcuACcgUGCCGCCGu -3'
miRNA:   3'- -GGUG------CggCUACUGCau-UG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42202 0.69 0.633135
Target:  5'- gCCGuggaGCUGGUGGCc-GACgugGCCGCCGg -3'
miRNA:   3'- -GGUg---CGGCUACUGcaUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57902 0.7 0.558796
Target:  5'- gCCGgGCUGAagGugGccgGGCUGaCCGCCGa -3'
miRNA:   3'- -GGUgCGGCUa-CugCa--UUGAC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 28570 0.7 0.53794
Target:  5'- cCCGCcaCCGGUGuGCGgcgGCUGCCuGCCGg -3'
miRNA:   3'- -GGUGc-GGCUAC-UGCau-UGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 28392 0.71 0.467406
Target:  5'- uCCucuCGCCGuacGCGUAcgUGCCGCCGg -3'
miRNA:   3'- -GGu--GCGGCuacUGCAUugACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 28896 0.71 0.467406
Target:  5'- gCGCGCCG-UGGCG--ACcGCCGCUGa -3'
miRNA:   3'- gGUGCGGCuACUGCauUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 39993 0.71 0.477205
Target:  5'- aCCugGUCGGUGugGUGGCUuaCCaGCCu -3'
miRNA:   3'- -GGugCGGCUACugCAUUGAc-GG-CGGc -5'
18991 3' -55.6 NC_004684.1 + 18646 0.71 0.4971
Target:  5'- uCUGC-CCGGUgacGACGUGACcaucgUGCCGCCGc -3'
miRNA:   3'- -GGUGcGGCUA---CUGCAUUG-----ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 46509 0.71 0.507187
Target:  5'- gCCAgcuUGCCGAUGACGgugGACUuGCCugcaCCGg -3'
miRNA:   3'- -GGU---GCGGCUACUGCa--UUGA-CGGc---GGC- -5'
18991 3' -55.6 NC_004684.1 + 15145 0.71 0.51736
Target:  5'- uCCACGCCagc-GCGcAGCUgGCCGCCGc -3'
miRNA:   3'- -GGUGCGGcuacUGCaUUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 17527 0.71 0.51736
Target:  5'- gCCACGCCGGacGACGUG---GUCGCCu -3'
miRNA:   3'- -GGUGCGGCUa-CUGCAUugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 14497 0.7 0.531735
Target:  5'- aCCACGCCGGucgccgguggcacggUGACGgugacccuggccUAACUGgCCGaCCGc -3'
miRNA:   3'- -GGUGCGGCU---------------ACUGC------------AUUGAC-GGC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.