miRNA display CGI


Results 81 - 100 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 18646 0.71 0.4971
Target:  5'- uCUGC-CCGGUgacGACGUGACcaucgUGCCGCCGc -3'
miRNA:   3'- -GGUGcGGCUA---CUGCAUUG-----ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 46509 0.71 0.507187
Target:  5'- gCCAgcuUGCCGAUGACGgugGACUuGCCugcaCCGg -3'
miRNA:   3'- -GGU---GCGGCUACUGCa--UUGA-CGGc---GGC- -5'
18991 3' -55.6 NC_004684.1 + 15145 0.71 0.51736
Target:  5'- uCCACGCCagc-GCGcAGCUgGCCGCCGc -3'
miRNA:   3'- -GGUGCGGcuacUGCaUUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 17527 0.71 0.51736
Target:  5'- gCCACGCCGGacGACGUG---GUCGCCu -3'
miRNA:   3'- -GGUGCGGCUa-CUGCAUugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 14497 0.7 0.531735
Target:  5'- aCCACGCCGGucgccgguggcacggUGACGgugacccuggccUAACUGgCCGaCCGc -3'
miRNA:   3'- -GGUGCGGCU---------------ACUGC------------AUUGAC-GGC-GGC- -5'
18991 3' -55.6 NC_004684.1 + 28570 0.7 0.53794
Target:  5'- cCCGCcaCCGGUGuGCGgcgGCUGCCuGCCGg -3'
miRNA:   3'- -GGUGc-GGCUAC-UGCau-UGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 57902 0.7 0.558796
Target:  5'- gCCGgGCUGAagGugGccgGGCUGaCCGCCGa -3'
miRNA:   3'- -GGUgCGGCUa-CugCa--UUGAC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 41427 0.7 0.558796
Target:  5'- cCCGUGgCGGUGguGCGgcGgUGCCGCCGg -3'
miRNA:   3'- -GGUGCgGCUAC--UGCauUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 4224 0.77 0.237621
Target:  5'- uCCGCGCCGAUG-CGcuccugGACcuggaGCCGCCGg -3'
miRNA:   3'- -GGUGCGGCUACuGCa-----UUGa----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 25951 0.75 0.319188
Target:  5'- gCCugGCCGAgGcCGUugAACagGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUaCuGCA--UUGa-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 45306 0.74 0.334668
Target:  5'- aCCaaGCGCCGcaugGACGc-GCUGCCGCUGg -3'
miRNA:   3'- -GG--UGCGGCua--CUGCauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24934 0.73 0.367248
Target:  5'- aCgGC-CCGGUGGCGcUAccGCUGCCGCCc -3'
miRNA:   3'- -GgUGcGGCUACUGC-AU--UGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 24159 0.73 0.384337
Target:  5'- gUCACGCCGuUGuAgGUGACcgUGCCGUCGg -3'
miRNA:   3'- -GGUGCGGCuAC-UgCAUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66751 0.77 0.225856
Target:  5'- gCAcCGCCGGUGACcgGGCcGCCGCCGa -3'
miRNA:   3'- gGU-GCGGCUACUGcaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66602 0.77 0.220161
Target:  5'- gCCGCGCUGAaGGCGgcccGCgagGCCGCCGc -3'
miRNA:   3'- -GGUGCGGCUaCUGCau--UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26490 0.79 0.165273
Target:  5'- gCGCGCCGGUGGCGgcguUGGCcagaucGCCGCCGa -3'
miRNA:   3'- gGUGCGGCUACUGC----AUUGa-----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 50697 0.79 0.160945
Target:  5'- gCCACGCCGAUGACcc-GCcGaCCGCCGa -3'
miRNA:   3'- -GGUGCGGCUACUGcauUGaC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26715 0.82 0.101555
Target:  5'- uCCGCGCCGAcggugucguUGGCGaUGACgccGCCGCCGg -3'
miRNA:   3'- -GGUGCGGCU---------ACUGC-AUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15783 0.83 0.093489
Target:  5'- aCgAUGCCGGUGGCGUcGgUGCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUACUGCAuUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 17612 0.66 0.806628
Target:  5'- aCCACGUCGuccGGCGUGGCa-CCGCg- -3'
miRNA:   3'- -GGUGCGGCua-CUGCAUUGacGGCGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.