miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 4224 0.77 0.237621
Target:  5'- uCCGCGCCGAUG-CGcuccugGACcuggaGCCGCCGg -3'
miRNA:   3'- -GGUGCGGCUACuGCa-----UUGa----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66751 0.77 0.225856
Target:  5'- gCAcCGCCGGUGACcgGGCcGCCGCCGa -3'
miRNA:   3'- gGU-GCGGCUACUGcaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66602 0.77 0.220161
Target:  5'- gCCGCGCUGAaGGCGgcccGCgagGCCGCCGc -3'
miRNA:   3'- -GGUGCGGCUaCUGCau--UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26490 0.79 0.165273
Target:  5'- gCGCGCCGGUGGCGgcguUGGCcagaucGCCGCCGa -3'
miRNA:   3'- gGUGCGGCUACUGC----AUUGa-----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 50697 0.79 0.160945
Target:  5'- gCCACGCCGAUGACcc-GCcGaCCGCCGa -3'
miRNA:   3'- -GGUGCGGCUACUGcauUGaC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26715 0.82 0.101555
Target:  5'- uCCGCGCCGAcggugucguUGGCGaUGACgccGCCGCCGg -3'
miRNA:   3'- -GGUGCGGCU---------ACUGC-AUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15783 0.83 0.093489
Target:  5'- aCgAUGCCGGUGGCGUcGgUGCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUACUGCAuUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22523 0.73 0.393077
Target:  5'- gCCGCGCCGAcggcgaUGGCGUugaggcccagcgGGCUGguuaggaauCCGCCGa -3'
miRNA:   3'- -GGUGCGGCU------ACUGCA------------UUGAC---------GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 52566 0.73 0.401945
Target:  5'- aCGCGCUGGagGugGUGGCggccaUGCCGUCGg -3'
miRNA:   3'- gGUGCGGCUa-CugCAUUG-----ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 20416 0.71 0.4971
Target:  5'- gCgACGCCGAUcuCGaUGGCcGCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUAcuGC-AUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 44368 0.71 0.4971
Target:  5'- gCgACGCCG-UGcACGagugGugUGCCGCCGu -3'
miRNA:   3'- -GgUGCGGCuAC-UGCa---UugACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 64773 0.71 0.487105
Target:  5'- aCAUGCuCGAcuggGACGUAcgcaaggugccGCUGCgCGCCGa -3'
miRNA:   3'- gGUGCG-GCUa---CUGCAU-----------UGACG-GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 5262 0.71 0.487105
Target:  5'- cCCucuuCGgCGAUGGCGggaauguugAugUGCCGCCa -3'
miRNA:   3'- -GGu---GCgGCUACUGCa--------UugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 43959 0.71 0.477205
Target:  5'- -uGCGCCGAacaUGGCGcacaUGCUGCCGa -3'
miRNA:   3'- ggUGCGGCU---ACUGCauugACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57767 0.71 0.467406
Target:  5'- gCCugGCCGAUGGCcac-CUGCUGUgGg -3'
miRNA:   3'- -GGugCGGCUACUGcauuGACGGCGgC- -5'
18991 3' -55.6 NC_004684.1 + 4990 0.72 0.448127
Target:  5'- gCCGCcgagGCCGGUGGCGaccagGCCGCCu -3'
miRNA:   3'- -GGUG----CGGCUACUGCauugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 924 0.72 0.447174
Target:  5'- gCACGCCGuugaucuGUGugGUGuccauGCggGCCGCCa -3'
miRNA:   3'- gGUGCGGC-------UACugCAU-----UGa-CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42790 0.72 0.429296
Target:  5'- gUCACGCCGGUGACcagaucguugAACUGguuggccaCCGCCGu -3'
miRNA:   3'- -GGUGCGGCUACUGca--------UUGAC--------GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 49841 0.73 0.410939
Target:  5'- cCCGCGCUGGUGcgcucCGUGccgaGCgUGCCGCUGa -3'
miRNA:   3'- -GGUGCGGCUACu----GCAU----UG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 18459 0.73 0.401945
Target:  5'- aCuuGCCGGUGAUGUcgAGCggcaccgcGCCGCCGg -3'
miRNA:   3'- gGugCGGCUACUGCA--UUGa-------CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.