miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 25884 0.7 0.557747
Target:  5'- gCCA-GuuGGUGACG-AACaccggcgUGCCGCCGg -3'
miRNA:   3'- -GGUgCggCUACUGCaUUG-------ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 924 0.72 0.447174
Target:  5'- gCACGCCGuugaucuGUGugGUGuccauGCggGCCGCCa -3'
miRNA:   3'- gGUGCGGC-------UACugCAU-----UGa-CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 26715 0.82 0.101555
Target:  5'- uCCGCGCCGAcggugucguUGGCGaUGACgccGCCGCCGg -3'
miRNA:   3'- -GGUGCGGCU---------ACUGC-AUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 18964 0.7 0.548337
Target:  5'- gCCGCGCUGGUGcCcUGAgUGCgGCCa -3'
miRNA:   3'- -GGUGCGGCUACuGcAUUgACGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 15783 0.83 0.093489
Target:  5'- aCgAUGCCGGUGGCGUcGgUGCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUACUGCAuUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 48943 0.68 0.686364
Target:  5'- uUCGCGCac-UGGCGcGACaUGCCGCCc -3'
miRNA:   3'- -GGUGCGgcuACUGCaUUG-ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 26490 0.79 0.165273
Target:  5'- gCGCGCCGGUGGCGgcguUGGCcagaucGCCGCCGa -3'
miRNA:   3'- gGUGCGGCUACUGC----AUUGa-----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66974 0.68 0.669405
Target:  5'- gCCGCGCCGaAggucgccaccggcgcUGACGUGcuggccagcGCggucgagGCCGCCa -3'
miRNA:   3'- -GGUGCGGC-U---------------ACUGCAU---------UGa------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 50232 0.68 0.66515
Target:  5'- uCCACGCUGGUGGaGUGc---CCGCCGa -3'
miRNA:   3'- -GGUGCGGCUACUgCAUugacGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24725 0.68 0.64382
Target:  5'- gCGCGCCGGaacgcguaGACGuUGGCcugGCCGCCc -3'
miRNA:   3'- gGUGCGGCUa-------CUGC-AUUGa--CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42640 0.69 0.633135
Target:  5'- gCCACGCCGAaGcCG-AAC-GCCGUCa -3'
miRNA:   3'- -GGUGCGGCUaCuGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 61541 0.69 0.611772
Target:  5'- aCGCGagcaCCGgcGGCGaGACaaUGCCGCCGg -3'
miRNA:   3'- gGUGC----GGCuaCUGCaUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 20125 0.69 0.576698
Target:  5'- aCCGCGCUGAUGGCGgggucuucaggcaccACgGCCuCCGg -3'
miRNA:   3'- -GGUGCGGCUACUGCau-------------UGaCGGcGGC- -5'
18991 3' -55.6 NC_004684.1 + 25913 0.7 0.53794
Target:  5'- gC-CGCCGAUGcCGUucugGCCGCCa -3'
miRNA:   3'- gGuGCGGCUACuGCAuugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 32766 0.71 0.51736
Target:  5'- --uUGCCGAgGcCGUAGCcaUGCCGCCGc -3'
miRNA:   3'- gguGCGGCUaCuGCAUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 64773 0.71 0.487105
Target:  5'- aCAUGCuCGAcuggGACGUAcgcaaggugccGCUGCgCGCCGa -3'
miRNA:   3'- gGUGCG-GCUa---CUGCAU-----------UGACG-GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57767 0.71 0.467406
Target:  5'- gCCugGCCGAUGGCcac-CUGCUGUgGg -3'
miRNA:   3'- -GGugCGGCUACUGcauuGACGGCGgC- -5'
18991 3' -55.6 NC_004684.1 + 18459 0.73 0.401945
Target:  5'- aCuuGCCGGUGAUGUcgAGCggcaccgcGCCGCCGg -3'
miRNA:   3'- gGugCGGCUACUGCA--UUGa-------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24159 0.73 0.384337
Target:  5'- gUCACGCCGuUGuAgGUGACcgUGCCGUCGg -3'
miRNA:   3'- -GGUGCGGCuAC-UgCAUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 4224 0.77 0.237621
Target:  5'- uCCGCGCCGAUG-CGcuccugGACcuggaGCCGCCGg -3'
miRNA:   3'- -GGUGCGGCUACuGCa-----UUGa----CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.