miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 20125 0.69 0.576698
Target:  5'- aCCGCGCUGAUGGCGgggucuucaggcaccACgGCCuCCGg -3'
miRNA:   3'- -GGUGCGGCUACUGCau-------------UGaCGGcGGC- -5'
18991 3' -55.6 NC_004684.1 + 25404 0.69 0.62245
Target:  5'- aUACGCCGccagggccGACG-AACcGCCGCCGc -3'
miRNA:   3'- gGUGCGGCua------CUGCaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66602 0.77 0.220161
Target:  5'- gCCGCGCUGAaGGCGgcccGCgagGCCGCCGc -3'
miRNA:   3'- -GGUGCGGCUaCUGCau--UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 25951 0.75 0.319188
Target:  5'- gCCugGCCGAgGcCGUugAACagGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUaCuGCA--UUGa-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22523 0.73 0.393077
Target:  5'- gCCGCGCCGAcggcgaUGGCGUugaggcccagcgGGCUGguuaggaauCCGCCGa -3'
miRNA:   3'- -GGUGCGGCU------ACUGCA------------UUGAC---------GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 49841 0.73 0.410939
Target:  5'- cCCGCGCUGGUGcgcucCGUGccgaGCgUGCCGCUGa -3'
miRNA:   3'- -GGUGCGGCUACu----GCAU----UG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 43959 0.71 0.477205
Target:  5'- -uGCGCCGAacaUGGCGcacaUGCUGCCGa -3'
miRNA:   3'- ggUGCGGCU---ACUGCauugACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 44368 0.71 0.4971
Target:  5'- gCgACGCCG-UGcACGagugGugUGCCGCCGu -3'
miRNA:   3'- -GgUGCGGCuAC-UGCa---UugACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 18249 0.7 0.531735
Target:  5'- aCGCGCCGAUuucGAUGUuGCcgagcgugaacuccuUGCCGCCc -3'
miRNA:   3'- gGUGCGGCUA---CUGCAuUG---------------ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 61183 0.7 0.548337
Target:  5'- gCCGCGUCGAccggUGGCGgcguuGCggagacaaUGCCGCCa -3'
miRNA:   3'- -GGUGCGGCU----ACUGCau---UG--------ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 61412 0.67 0.736321
Target:  5'- aCGcCGCCGAgggcggcggcccGGCGgcGgUGCUGCCGg -3'
miRNA:   3'- gGU-GCGGCUa-----------CUGCauUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 49335 0.67 0.717791
Target:  5'- aCGCGCCGcUGugGggcGACgUGCCGacgcCCGg -3'
miRNA:   3'- gGUGCGGCuACugCa--UUG-ACGGC----GGC- -5'
18991 3' -55.6 NC_004684.1 + 27541 0.68 0.64382
Target:  5'- gUCAcCGCCGGUGGUGgcACcgcgcuccaaUGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCUACUGCauUG----------ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 59564 0.68 0.654495
Target:  5'- gCugGCCGcgcagGugGUGGacaucGCCGCCGa -3'
miRNA:   3'- gGugCGGCua---CugCAUUga---CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66974 0.68 0.669405
Target:  5'- gCCGCGCCGaAggucgccaccggcgcUGACGUGcuggccagcGCggucgagGCCGCCa -3'
miRNA:   3'- -GGUGCGGC-U---------------ACUGCAU---------UGa------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 48943 0.68 0.686364
Target:  5'- uUCGCGCac-UGGCGcGACaUGCCGCCc -3'
miRNA:   3'- -GGUGCGgcuACUGCaUUG-ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 13067 0.68 0.686364
Target:  5'- cCgGCGCuCGGUGuuGc--CUGCCGCCGc -3'
miRNA:   3'- -GgUGCG-GCUACugCauuGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26553 0.67 0.696902
Target:  5'- gCACGCUGuc-GCGgccaGGCgUGCCGCCGu -3'
miRNA:   3'- gGUGCGGCuacUGCa---UUG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 23131 0.67 0.707382
Target:  5'- gCCAgGCCGucaccaaGGCGUGGCaggaaaucGCUGCCGa -3'
miRNA:   3'- -GGUgCGGCua-----CUGCAUUGa-------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 65404 0.67 0.717791
Target:  5'- -gGCGCUGGccGugGUGcacaGCgagGCCGCCGu -3'
miRNA:   3'- ggUGCGGCUa-CugCAU----UGa--CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.