miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 48943 0.68 0.686364
Target:  5'- uUCGCGCac-UGGCGcGACaUGCCGCCc -3'
miRNA:   3'- -GGUGCGgcuACUGCaUUG-ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 61014 0.68 0.686364
Target:  5'- aCugGCCGA-GGCGUGcgacGCcGUgGCCGa -3'
miRNA:   3'- gGugCGGCUaCUGCAU----UGaCGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 46330 0.67 0.696902
Target:  5'- aCCACGCCGGUGcCGaaGGCUuccaCGCCa -3'
miRNA:   3'- -GGUGCGGCUACuGCa-UUGAcg--GCGGc -5'
18991 3' -55.6 NC_004684.1 + 2339 0.67 0.696902
Target:  5'- gCCGCGCUGAUcaGCGUGGCguUGCgGuuGg -3'
miRNA:   3'- -GGUGCGGCUAc-UGCAUUG--ACGgCggC- -5'
18991 3' -55.6 NC_004684.1 + 23131 0.67 0.707382
Target:  5'- gCCAgGCCGucaccaaGGCGUGGCaggaaaucGCUGCCGa -3'
miRNA:   3'- -GGUgCGGCua-----CUGCAUUGa-------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 12205 0.67 0.717791
Target:  5'- uCCucaGCCGggGucggggguuGCGUGAUgGCCGCCGc -3'
miRNA:   3'- -GGug-CGGCuaC---------UGCAUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 19410 0.67 0.717791
Target:  5'- gCCACGgCGgcGGCGUA--UGCgGCCu -3'
miRNA:   3'- -GGUGCgGCuaCUGCAUugACGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 49335 0.67 0.717791
Target:  5'- aCGCGCCGcUGugGggcGACgUGCCGacgcCCGg -3'
miRNA:   3'- gGUGCGGCuACugCa--UUG-ACGGC----GGC- -5'
18991 3' -55.6 NC_004684.1 + 25404 0.69 0.62245
Target:  5'- aUACGCCGccagggccGACG-AACcGCCGCCGc -3'
miRNA:   3'- gGUGCGGCua------CUGCaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 29543 0.66 0.787835
Target:  5'- aCCAgGUCGAUGuCG-AACcgGUCGCCc -3'
miRNA:   3'- -GGUgCGGCUACuGCaUUGa-CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 50132 0.66 0.797313
Target:  5'- uCCugGCCug-GAgccaggcacCGgccacGCUGCCGCCGa -3'
miRNA:   3'- -GGugCGGcuaCU---------GCau---UGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 52167 0.66 0.806628
Target:  5'- ---gGCCGGUGGCauggAGCgggcguucaagGCCGCCGg -3'
miRNA:   3'- ggugCGGCUACUGca--UUGa----------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 17612 0.66 0.806628
Target:  5'- aCCACGUCGuccGGCGUGGCa-CCGCg- -3'
miRNA:   3'- -GGUGCGGCua-CUGCAUUGacGGCGgc -5'
18991 3' -55.6 NC_004684.1 + 4990 0.72 0.448127
Target:  5'- gCCGCcgagGCCGGUGGCGaccagGCCGCCu -3'
miRNA:   3'- -GGUG----CGGCUACUGCauugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 5262 0.71 0.487105
Target:  5'- cCCucuuCGgCGAUGGCGggaauguugAugUGCCGCCa -3'
miRNA:   3'- -GGu---GCgGCUACUGCa--------UugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 33892 0.71 0.507187
Target:  5'- gCCgACGCCGAaccgcuCGaUGACuUGCCGCCGa -3'
miRNA:   3'- -GG-UGCGGCUacu---GC-AUUG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 38563 0.7 0.53794
Target:  5'- -gACGCCGGUGccugccuugucgGCGUGAUcgcGCCGUCGg -3'
miRNA:   3'- ggUGCGGCUAC------------UGCAUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 25884 0.7 0.557747
Target:  5'- gCCA-GuuGGUGACG-AACaccggcgUGCCGCCGg -3'
miRNA:   3'- -GGUgCggCUACUGCaUUG-------ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 33328 0.69 0.601111
Target:  5'- gCACGCCcuuuuuGGUGAgCGUAAgcaguuggGCCGCCGg -3'
miRNA:   3'- gGUGCGG------CUACU-GCAUUga------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 27064 0.67 0.728121
Target:  5'- uCCAgCGCCGGguccgcaGGCGUGGacaucGCCGCCc -3'
miRNA:   3'- -GGU-GCGGCUa------CUGCAUUga---CGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.