miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 36737 0.67 0.696902
Target:  5'- aCCuguuCGCCGucccGGCGcUGAC-GCCGCCa -3'
miRNA:   3'- -GGu---GCGGCua--CUGC-AUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 18330 0.67 0.707382
Target:  5'- gCACGCCGGUGcCGcccccGgaGCCGaCCGg -3'
miRNA:   3'- gGUGCGGCUACuGCau---UgaCGGC-GGC- -5'
18991 3' -55.6 NC_004684.1 + 5962 0.67 0.696902
Target:  5'- gCCGCGCCGGUGA-GcGACcgGCCGagcaagucCCGg -3'
miRNA:   3'- -GGUGCGGCUACUgCaUUGa-CGGC--------GGC- -5'
18991 3' -55.6 NC_004684.1 + 3264 0.75 0.28986
Target:  5'- gCCugGCCGGacaucgugGACGc-ACUGCUGCCGg -3'
miRNA:   3'- -GGugCGGCUa-------CUGCauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 16313 0.67 0.736321
Target:  5'- aCCGggcCGCCGGUGAUGUAAUgaccagcgaggaGCgGCUGg -3'
miRNA:   3'- -GGU---GCGGCUACUGCAUUGa-----------CGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 27064 0.67 0.728121
Target:  5'- uCCAgCGCCGGguccgcaGGCGUGGacaucGCCGCCc -3'
miRNA:   3'- -GGU-GCGGCUa------CUGCAUUga---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 10600 0.67 0.717791
Target:  5'- gCGCGCgaGGUG-CGcAACUGCCGuuGc -3'
miRNA:   3'- gGUGCGg-CUACuGCaUUGACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 42906 0.67 0.717791
Target:  5'- aCCGCcaCCGAcGACG-AAC-GCCGCCa -3'
miRNA:   3'- -GGUGc-GGCUaCUGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 15812 0.68 0.686364
Target:  5'- aCCACGCCGAgcGACccgGUGGCgcgcgGCauCGCCa -3'
miRNA:   3'- -GGUGCGGCUa-CUG---CAUUGa----CG--GCGGc -5'
18991 3' -55.6 NC_004684.1 + 16879 0.72 0.429296
Target:  5'- uCUGCGCCGGUGugGUGcagaguuucaaGCgcacaCCGCCGa -3'
miRNA:   3'- -GGUGCGGCUACugCAU-----------UGac---GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 46509 0.71 0.507187
Target:  5'- gCCAgcuUGCCGAUGACGgugGACUuGCCugcaCCGg -3'
miRNA:   3'- -GGU---GCGGCUACUGCa--UUGA-CGGc---GGC- -5'
18991 3' -55.6 NC_004684.1 + 17527 0.71 0.51736
Target:  5'- gCCACGCCGGacGACGUG---GUCGCCu -3'
miRNA:   3'- -GGUGCGGCUa-CUGCAUugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 14497 0.7 0.531735
Target:  5'- aCCACGCCGGucgccgguggcacggUGACGgugacccuggccUAACUGgCCGaCCGc -3'
miRNA:   3'- -GGUGCGGCU---------------ACUGC------------AUUGAC-GGC-GGC- -5'
18991 3' -55.6 NC_004684.1 + 42760 0.67 0.726062
Target:  5'- gCCugGCCGGUG-CGauccccgguuugAGCgGCCuGCCGg -3'
miRNA:   3'- -GGugCGGCUACuGCa-----------UUGaCGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 28570 0.7 0.53794
Target:  5'- cCCGCcaCCGGUGuGCGgcgGCUGCCuGCCGg -3'
miRNA:   3'- -GGUGc-GGCUAC-UGCau-UGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 57902 0.7 0.558796
Target:  5'- gCCGgGCUGAagGugGccgGGCUGaCCGCCGa -3'
miRNA:   3'- -GGUgCGGCUa-CugCa--UUGAC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 11593 0.67 0.717791
Target:  5'- gCC-CGCCGGUgcgccuggacGACGgcaccgAGCUgGCCGUCGg -3'
miRNA:   3'- -GGuGCGGCUA----------CUGCa-----UUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 23041 0.68 0.686364
Target:  5'- gCCACGCCuuGGUGACGgccugGCCaaGCUGg -3'
miRNA:   3'- -GGUGCGG--CUACUGCauugaCGG--CGGC- -5'
18991 3' -55.6 NC_004684.1 + 38421 0.68 0.686364
Target:  5'- aCCugGCCGAUGcggGgGUGACcacguccaagGuuGCCGa -3'
miRNA:   3'- -GGugCGGCUAC---UgCAUUGa---------CggCGGC- -5'
18991 3' -55.6 NC_004684.1 + 30995 0.72 0.429296
Target:  5'- -gACGCUGAUGGCGcAGCUGggccugaCGCCGa -3'
miRNA:   3'- ggUGCGGCUACUGCaUUGACg------GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.