miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 36737 0.67 0.696902
Target:  5'- aCCuguuCGCCGucccGGCGcUGAC-GCCGCCa -3'
miRNA:   3'- -GGu---GCGGCua--CUGC-AUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 18330 0.67 0.707382
Target:  5'- gCACGCCGGUGcCGcccccGgaGCCGaCCGg -3'
miRNA:   3'- gGUGCGGCUACuGCau---UgaCGGC-GGC- -5'
18991 3' -55.6 NC_004684.1 + 10600 0.67 0.717791
Target:  5'- gCGCGCgaGGUG-CGcAACUGCCGuuGc -3'
miRNA:   3'- gGUGCGg-CUACuGCaUUGACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 42906 0.67 0.717791
Target:  5'- aCCGCcaCCGAcGACG-AAC-GCCGCCa -3'
miRNA:   3'- -GGUGc-GGCUaCUGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42760 0.67 0.726062
Target:  5'- gCCugGCCGGUG-CGauccccgguuugAGCgGCCuGCCGg -3'
miRNA:   3'- -GGugCGGCUACuGCa-----------UUGaCGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 27064 0.67 0.728121
Target:  5'- uCCAgCGCCGGguccgcaGGCGUGGacaucGCCGCCc -3'
miRNA:   3'- -GGU-GCGGCUa------CUGCAUUga---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 23041 0.68 0.686364
Target:  5'- gCCACGCCuuGGUGACGgccugGCCaaGCUGg -3'
miRNA:   3'- -GGUGCGG--CUACUGCauugaCGG--CGGC- -5'
18991 3' -55.6 NC_004684.1 + 42632 0.68 0.675777
Target:  5'- gCCGcCGCCGGUGcUGg---UGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCUACuGCauugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 3481 0.68 0.675777
Target:  5'- gCCACGCCGGgccgcacCGUGGCcGCCaggacGCCGc -3'
miRNA:   3'- -GGUGCGGCUacu----GCAUUGaCGG-----CGGC- -5'
18991 3' -55.6 NC_004684.1 + 17527 0.71 0.51736
Target:  5'- gCCACGCCGGacGACGUG---GUCGCCu -3'
miRNA:   3'- -GGUGCGGCUa-CUGCAUugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 14497 0.7 0.531735
Target:  5'- aCCACGCCGGucgccgguggcacggUGACGgugacccuggccUAACUGgCCGaCCGc -3'
miRNA:   3'- -GGUGCGGCU---------------ACUGC------------AUUGAC-GGC-GGC- -5'
18991 3' -55.6 NC_004684.1 + 28570 0.7 0.53794
Target:  5'- cCCGCcaCCGGUGuGCGgcgGCUGCCuGCCGg -3'
miRNA:   3'- -GGUGc-GGCUAC-UGCau-UGACGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 57902 0.7 0.558796
Target:  5'- gCCGgGCUGAagGugGccgGGCUGaCCGCCGa -3'
miRNA:   3'- -GGUgCGGCUa-CugCa--UUGAC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 40289 0.68 0.64382
Target:  5'- aCCGCGCCgucguuggugucGAUGGCGUAGCgcccgGCagGCaCGa -3'
miRNA:   3'- -GGUGCGG------------CUACUGCAUUGa----CGg-CG-GC- -5'
18991 3' -55.6 NC_004684.1 + 61684 0.68 0.64382
Target:  5'- gCACGCCauUGGCGUcGgUGCCGUgGg -3'
miRNA:   3'- gGUGCGGcuACUGCAuUgACGGCGgC- -5'
18991 3' -55.6 NC_004684.1 + 19218 0.68 0.654495
Target:  5'- gCCugaGCCGGUGAguUGUGACUgGCCaGUCGa -3'
miRNA:   3'- -GGug-CGGCUACU--GCAUUGA-CGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 62183 0.68 0.654495
Target:  5'- cCCG-GCCGAUGAUGgcgAACacguUGCCGUCc -3'
miRNA:   3'- -GGUgCGGCUACUGCa--UUG----ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 11151 0.68 0.66515
Target:  5'- gUCGCGCCGucgGugGaccugGCCGCCa -3'
miRNA:   3'- -GGUGCGGCua-CugCauugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 43923 0.68 0.66515
Target:  5'- uCCugGuuGAUGGCGggcauUGGCUcccaggucucGCCGUCGa -3'
miRNA:   3'- -GGugCggCUACUGC-----AUUGA----------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 62610 0.68 0.66515
Target:  5'- aCCGCGCCGA-GGCGc--UUGCUGgCGa -3'
miRNA:   3'- -GGUGCGGCUaCUGCauuGACGGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.