miRNA display CGI


Results 141 - 160 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 37620 0.66 0.787835
Target:  5'- cCCAUGCCGAacgccgucggUG-CGcUGGCcaugGCCGCCc -3'
miRNA:   3'- -GGUGCGGCU----------ACuGC-AUUGa---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 9914 0.66 0.797313
Target:  5'- uCCGgGCUGAccgaGGCgGUGAUUGUgGCCGg -3'
miRNA:   3'- -GGUgCGGCUa---CUG-CAUUGACGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 11656 0.66 0.797313
Target:  5'- gCCACGCCagcacGGCGgccAACgUGaCCGCCGc -3'
miRNA:   3'- -GGUGCGGcua--CUGCa--UUG-AC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 8725 0.66 0.806628
Target:  5'- gCgGCGCUGAUcccGAUGUuc--GCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUA---CUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 33657 0.66 0.806628
Target:  5'- cCCuCGCCGGgcaUGGCGUcGCUGUgcaccaccaccgCGCUGg -3'
miRNA:   3'- -GGuGCGGCU---ACUGCAuUGACG------------GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 27064 0.67 0.728121
Target:  5'- uCCAgCGCCGGguccgcaGGCGUGGacaucGCCGCCc -3'
miRNA:   3'- -GGU-GCGGCUa------CUGCAUUga---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 42906 0.67 0.717791
Target:  5'- aCCGCcaCCGAcGACG-AAC-GCCGCCa -3'
miRNA:   3'- -GGUGc-GGCUaCUGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 11151 0.68 0.66515
Target:  5'- gUCGCGCCGucgGugGaccugGCCGCCa -3'
miRNA:   3'- -GGUGCGGCua-CugCauugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 43923 0.68 0.66515
Target:  5'- uCCugGuuGAUGGCGggcauUGGCUcccaggucucGCCGUCGa -3'
miRNA:   3'- -GGugCggCUACUGC-----AUUGA----------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 62610 0.68 0.66515
Target:  5'- aCCGCGCCGA-GGCGc--UUGCUGgCGa -3'
miRNA:   3'- -GGUGCGGCUaCUGCauuGACGGCgGC- -5'
18991 3' -55.6 NC_004684.1 + 3481 0.68 0.675777
Target:  5'- gCCACGCCGGgccgcacCGUGGCcGCCaggacGCCGc -3'
miRNA:   3'- -GGUGCGGCUacu----GCAUUGaCGG-----CGGC- -5'
18991 3' -55.6 NC_004684.1 + 42632 0.68 0.675777
Target:  5'- gCCGcCGCCGGUGcUGg---UGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCUACuGCauugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 23041 0.68 0.686364
Target:  5'- gCCACGCCuuGGUGACGgccugGCCaaGCUGg -3'
miRNA:   3'- -GGUGCGG--CUACUGCauugaCGG--CGGC- -5'
18991 3' -55.6 NC_004684.1 + 38421 0.68 0.686364
Target:  5'- aCCugGCCGAUGcggGgGUGACcacguccaagGuuGCCGa -3'
miRNA:   3'- -GGugCGGCUAC---UgCAUUGa---------CggCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15812 0.68 0.686364
Target:  5'- aCCACGCCGAgcGACccgGUGGCgcgcgGCauCGCCa -3'
miRNA:   3'- -GGUGCGGCUa-CUG---CAUUGa----CG--GCGGc -5'
18991 3' -55.6 NC_004684.1 + 5962 0.67 0.696902
Target:  5'- gCCGCGCCGGUGA-GcGACcgGCCGagcaagucCCGg -3'
miRNA:   3'- -GGUGCGGCUACUgCaUUGa-CGGC--------GGC- -5'
18991 3' -55.6 NC_004684.1 + 36737 0.67 0.696902
Target:  5'- aCCuguuCGCCGucccGGCGcUGAC-GCCGCCa -3'
miRNA:   3'- -GGu---GCGGCua--CUGC-AUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 18330 0.67 0.707382
Target:  5'- gCACGCCGGUGcCGcccccGgaGCCGaCCGg -3'
miRNA:   3'- gGUGCGGCUACuGCau---UgaCGGC-GGC- -5'
18991 3' -55.6 NC_004684.1 + 10600 0.67 0.717791
Target:  5'- gCGCGCgaGGUG-CGcAACUGCCGuuGc -3'
miRNA:   3'- gGUGCGg-CUACuGCaUUGACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 11593 0.67 0.717791
Target:  5'- gCC-CGCCGGUgcgccuggacGACGgcaccgAGCUgGCCGUCGg -3'
miRNA:   3'- -GGuGCGGCUA----------CUGCa-----UUGA-CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.