miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18992 5' -55 NC_004684.1 + 22146 0.66 0.798913
Target:  5'- ---cGCGGCauCCaugGCAUCACCGAGg -3'
miRNA:   3'- gauuUGCCGcuGGca-CGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 60915 0.66 0.797964
Target:  5'- --cGACGGUGAguCCGUguccgGCACCugguacgccacgcACCGAGg -3'
miRNA:   3'- gauUUGCCGCU--GGCA-----CGUGG-------------UGGCUC- -5'
18992 5' -55 NC_004684.1 + 8706 0.66 0.797964
Target:  5'- --cGGCGGUGcCgGUGCACCGggcuuguUCGAGg -3'
miRNA:   3'- gauUUGCCGCuGgCACGUGGU-------GGCUC- -5'
18992 5' -55 NC_004684.1 + 39605 0.66 0.797964
Target:  5'- ---cACGGCGGuauuaucCCGUGCAUgGCCaagGAGa -3'
miRNA:   3'- gauuUGCCGCU-------GGCACGUGgUGG---CUC- -5'
18992 5' -55 NC_004684.1 + 60417 0.66 0.797013
Target:  5'- ---cGCGGUGAUCGcgcucgaacgcauUGCcgaggcccuggagGCCGCCGAGg -3'
miRNA:   3'- gauuUGCCGCUGGC-------------ACG-------------UGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 29794 0.66 0.789348
Target:  5'- ---uGCGGUacACCG-GCACCuACCGGGa -3'
miRNA:   3'- gauuUGCCGc-UGGCaCGUGG-UGGCUC- -5'
18992 5' -55 NC_004684.1 + 18481 0.66 0.789348
Target:  5'- gCUGu-CGGUGuCCG-GCACCGCCa-- -3'
miRNA:   3'- -GAUuuGCCGCuGGCaCGUGGUGGcuc -5'
18992 5' -55 NC_004684.1 + 35451 0.66 0.789348
Target:  5'- --cAGCgGGCGACCGU-UGCgGCCGGGc -3'
miRNA:   3'- gauUUG-CCGCUGGCAcGUGgUGGCUC- -5'
18992 5' -55 NC_004684.1 + 57034 0.66 0.789347
Target:  5'- ----cUGuGCG-CCGUGCACCAgucCCGGGc -3'
miRNA:   3'- gauuuGC-CGCuGGCACGUGGU---GGCUC- -5'
18992 5' -55 NC_004684.1 + 44374 0.66 0.789347
Target:  5'- -aGuuCGGCGacGCCGUGCacgagugguguGCCGCCGu- -3'
miRNA:   3'- gaUuuGCCGC--UGGCACG-----------UGGUGGCuc -5'
18992 5' -55 NC_004684.1 + 52462 0.66 0.789347
Target:  5'- cCUGGAuCGGCuGGgaCG-GCACCAUCGAGu -3'
miRNA:   3'- -GAUUU-GCCG-CUg-GCaCGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 11666 0.66 0.779624
Target:  5'- ---cACGGCGGCCaacGUG-ACCGCCGc- -3'
miRNA:   3'- gauuUGCCGCUGG---CACgUGGUGGCuc -5'
18992 5' -55 NC_004684.1 + 54039 0.66 0.779624
Target:  5'- ----gUGGCGGgUGUGC-CCGCCGuAGg -3'
miRNA:   3'- gauuuGCCGCUgGCACGuGGUGGC-UC- -5'
18992 5' -55 NC_004684.1 + 61917 0.66 0.779624
Target:  5'- uCUAucGCGGgGugCGggccacgGCACCcGCCGGGc -3'
miRNA:   3'- -GAUu-UGCCgCugGCa------CGUGG-UGGCUC- -5'
18992 5' -55 NC_004684.1 + 49630 0.66 0.779624
Target:  5'- -gAAGuCGGCcACCGcGCacACCGCCGGGu -3'
miRNA:   3'- gaUUU-GCCGcUGGCaCG--UGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 24146 0.66 0.776678
Target:  5'- -----aGGUGACCGUGCcgucgggguugaucACCgcGCCGGGc -3'
miRNA:   3'- gauuugCCGCUGGCACG--------------UGG--UGGCUC- -5'
18992 5' -55 NC_004684.1 + 56221 0.66 0.776678
Target:  5'- -gGAGCGGCGcaugcaggcggucaGCC-UGCGCaaCGCCGGGa -3'
miRNA:   3'- gaUUUGCCGC--------------UGGcACGUG--GUGGCUC- -5'
18992 5' -55 NC_004684.1 + 17385 0.66 0.776678
Target:  5'- -aGGGCcGCGACCccggccagaaaaccaGCGCCGCCGAGc -3'
miRNA:   3'- gaUUUGcCGCUGGca-------------CGUGGUGGCUC- -5'
18992 5' -55 NC_004684.1 + 53590 0.66 0.769753
Target:  5'- -cAGGCGGUcgGACaGUGCGCCGCUcuuGAGc -3'
miRNA:   3'- gaUUUGCCG--CUGgCACGUGGUGG---CUC- -5'
18992 5' -55 NC_004684.1 + 29612 0.66 0.769753
Target:  5'- cCUAggcAGCGGCGugCagcUGCACCGCgaUGGGa -3'
miRNA:   3'- -GAU---UUGCCGCugGc--ACGUGGUG--GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.