miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18993 3' -62.7 NC_004684.1 + 55555 0.66 0.427335
Target:  5'- cCGCUGGCcGcCGUGGCCcggUGGCCGgGg -3'
miRNA:   3'- cGCGACCGcCaGUGCCGG---ACCGGUgC- -5'
18993 3' -62.7 NC_004684.1 + 39614 0.66 0.427335
Target:  5'- aGCGCucccacuccUGGCGGgggucgCGCGGCaC-GGUCACc -3'
miRNA:   3'- -CGCG---------ACCGCCa-----GUGCCG-GaCCGGUGc -5'
18993 3' -62.7 NC_004684.1 + 12088 0.66 0.427335
Target:  5'- gGUGCUGGCccgCGCGGC--GGCCAUc -3'
miRNA:   3'- -CGCGACCGccaGUGCCGgaCCGGUGc -5'
18993 3' -62.7 NC_004684.1 + 60067 0.66 0.427335
Target:  5'- cGCGCggcccGGCGGcccgUGCgGGCCUucaccgGGCCACc -3'
miRNA:   3'- -CGCGa----CCGCCa---GUG-CCGGA------CCGGUGc -5'
18993 3' -62.7 NC_004684.1 + 11225 0.66 0.427334
Target:  5'- gGCGCgaccaccuugUGGaucaacaGGUCAUaGGCCUGGUCgGCGu -3'
miRNA:   3'- -CGCG----------ACCg------CCAGUG-CCGGACCGG-UGC- -5'
18993 3' -62.7 NC_004684.1 + 59054 0.66 0.427334
Target:  5'- aGCGCggcagcucGGCGGaCAgGGCCcggcgcaaGGCCugGc -3'
miRNA:   3'- -CGCGa-------CCGCCaGUgCCGGa-------CCGGugC- -5'
18993 3' -62.7 NC_004684.1 + 20887 0.66 0.427334
Target:  5'- cGCgGCUGGC-GUUGCGuGCCgguggcuucggGGCCACc -3'
miRNA:   3'- -CG-CGACCGcCAGUGC-CGGa----------CCGGUGc -5'
18993 3' -62.7 NC_004684.1 + 35562 0.66 0.427334
Target:  5'- uGCGCaguucGGaCaGUC-CGGCCcGGCCGCa -3'
miRNA:   3'- -CGCGa----CC-GcCAGuGCCGGaCCGGUGc -5'
18993 3' -62.7 NC_004684.1 + 33295 0.66 0.427334
Target:  5'- cCGCcgGGCuGUC-CGucGCCaUGGCCACGg -3'
miRNA:   3'- cGCGa-CCGcCAGuGC--CGG-ACCGGUGC- -5'
18993 3' -62.7 NC_004684.1 + 66485 0.66 0.418437
Target:  5'- cCGgUGGCGGcua-GGCCUuGGCgGCGg -3'
miRNA:   3'- cGCgACCGCCagugCCGGA-CCGgUGC- -5'
18993 3' -62.7 NC_004684.1 + 22002 0.66 0.418437
Target:  5'- -gGC-GGUGGUCACcgGGCCaGGCUAUc -3'
miRNA:   3'- cgCGaCCGCCAGUG--CCGGaCCGGUGc -5'
18993 3' -62.7 NC_004684.1 + 18028 0.66 0.418437
Target:  5'- gGCGUUGGaGGUCugGaCC-GGCgGCGa -3'
miRNA:   3'- -CGCGACCgCCAGugCcGGaCCGgUGC- -5'
18993 3' -62.7 NC_004684.1 + 11146 0.66 0.418437
Target:  5'- ----aGGUGGUCGCgccgucgguGGaCCUGGCCGCc -3'
miRNA:   3'- cgcgaCCGCCAGUG---------CC-GGACCGGUGc -5'
18993 3' -62.7 NC_004684.1 + 53314 0.66 0.413152
Target:  5'- cGUGCcacgUGGUGGUgCugGGCacccuggacgcauucCUGGCCAgCGg -3'
miRNA:   3'- -CGCG----ACCGCCA-GugCCG---------------GACCGGU-GC- -5'
18993 3' -62.7 NC_004684.1 + 11894 0.66 0.413152
Target:  5'- cGCGCUcgcgcccuucuccacGGUGGcCugguCGGCCcacggGGCCACc -3'
miRNA:   3'- -CGCGA---------------CCGCCaGu---GCCGGa----CCGGUGc -5'
18993 3' -62.7 NC_004684.1 + 36002 0.66 0.409653
Target:  5'- gGCGCgagccucuuuGCGGUC-Ca-CCUGGCCGCGa -3'
miRNA:   3'- -CGCGac--------CGCCAGuGccGGACCGGUGC- -5'
18993 3' -62.7 NC_004684.1 + 59588 0.66 0.409653
Target:  5'- cGCGCccGGUGcuccGUUggGGCCgcUGGCCGCGc -3'
miRNA:   3'- -CGCGa-CCGC----CAGugCCGG--ACCGGUGC- -5'
18993 3' -62.7 NC_004684.1 + 41768 0.66 0.409653
Target:  5'- cGCGCUGGguguugccgaGGUCGgccCGGCCUucguacGCCGCa -3'
miRNA:   3'- -CGCGACCg---------CCAGU---GCCGGAc-----CGGUGc -5'
18993 3' -62.7 NC_004684.1 + 23474 0.66 0.409653
Target:  5'- aGCGUgacGGCGGUggugacCGCuuuCCUGGCCugGa -3'
miRNA:   3'- -CGCGa--CCGCCA------GUGcc-GGACCGGugC- -5'
18993 3' -62.7 NC_004684.1 + 58507 0.66 0.409653
Target:  5'- cGCGCcgacuGCGGUCcaGCGuGCCguUGGCgGCGg -3'
miRNA:   3'- -CGCGac---CGCCAG--UGC-CGG--ACCGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.