Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18993 | 5' | -57 | NC_004684.1 | + | 58623 | 0.66 | 0.647532 |
Target: 5'- gGCCcgUGG-C-GGCUGGU-GCCgCGCUg -3' miRNA: 3'- -CGGuaACUaGaCCGACCAgCGG-GCGA- -5' |
|||||||
18993 | 5' | -57 | NC_004684.1 | + | 57558 | 0.66 | 0.647532 |
Target: 5'- cGCCGagcUGcgCcGGUUGGccgacaUCGCCCGCa -3' miRNA: 3'- -CGGUa--ACuaGaCCGACC------AGCGGGCGa -5' |
|||||||
18993 | 5' | -57 | NC_004684.1 | + | 1229 | 0.66 | 0.647532 |
Target: 5'- gGCCucggcGGcCUGGUcGGUCGCCCGg- -3' miRNA: 3'- -CGGuaa--CUaGACCGaCCAGCGGGCga -5' |
|||||||
18993 | 5' | -57 | NC_004684.1 | + | 17747 | 0.66 | 0.669074 |
Target: 5'- gGCCAUg---CUGGCUuGUCuCCUGCUa -3' miRNA: 3'- -CGGUAacuaGACCGAcCAGcGGGCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home