miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18994 3' -58.2 NC_004684.1 + 10265 0.66 0.590475
Target:  5'- gGGCcaacCAAcUGGCCAGCG-ACGCCGg -3'
miRNA:   3'- gCCGa---GUUaGCCGGUCGCcUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 14615 0.66 0.590475
Target:  5'- uCGGC-CAGUUaGGCCAG-GGuCACCGu -3'
miRNA:   3'- -GCCGaGUUAG-CCGGUCgCCuGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 32049 0.66 0.590475
Target:  5'- aGGUggUGAUCGGCUGGCgucGGAUugcgGCCACg -3'
miRNA:   3'- gCCGa-GUUAGCCGGUCG---CCUG----UGGUG- -5'
18994 3' -58.2 NC_004684.1 + 985 0.66 0.590475
Target:  5'- gGGCguucUCGGCCAgcaccaagguGCGGAgauuucCACCGCg -3'
miRNA:   3'- gCCGaguuAGCCGGU----------CGCCU------GUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 53740 0.66 0.590475
Target:  5'- gGGUUCGA-CGGCCAG-GaACACCGa -3'
miRNA:   3'- gCCGAGUUaGCCGGUCgCcUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 25801 0.66 0.590475
Target:  5'- aGGCUCAugauGUUGggcauGCCAGCuG-CGCCACg -3'
miRNA:   3'- gCCGAGU----UAGC-----CGGUCGcCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 19874 0.66 0.589413
Target:  5'- aGGCcCGccaucuuGUCGcccCCGGCGGGCACCGg -3'
miRNA:   3'- gCCGaGU-------UAGCc--GGUCGCCUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 39176 0.66 0.579872
Target:  5'- gGGUgCAAUgGGaugacuCCAGCGG-CACCGCc -3'
miRNA:   3'- gCCGaGUUAgCC------GGUCGCCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 31950 0.66 0.579872
Target:  5'- uGGCcgCAAUCcgacGCCAGCcGAuCACCACc -3'
miRNA:   3'- gCCGa-GUUAGc---CGGUCGcCU-GUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 28470 0.67 0.56931
Target:  5'- aCGGCgagaGGaUGGCCAGCucccaGGACACC-Cg -3'
miRNA:   3'- -GCCGag--UUaGCCGGUCG-----CCUGUGGuG- -5'
18994 3' -58.2 NC_004684.1 + 65892 0.67 0.56931
Target:  5'- gCGGCgcgcaGGUUGGCCAccaGGGcCGCCGCa -3'
miRNA:   3'- -GCCGag---UUAGCCGGUcg-CCU-GUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 57369 0.67 0.568256
Target:  5'- gCGGCUCGccGUCacaGGCCGagcuguGCGGGCcgacgguGCCGCc -3'
miRNA:   3'- -GCCGAGU--UAG---CCGGU------CGCCUG-------UGGUG- -5'
18994 3' -58.2 NC_004684.1 + 13728 0.67 0.558796
Target:  5'- aGGCgcuGUCGGUCGGUGc-CACCACc -3'
miRNA:   3'- gCCGaguUAGCCGGUCGCcuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 28993 0.67 0.558796
Target:  5'- cCGG-UCGAUCaG-CGGCGGuCGCCACg -3'
miRNA:   3'- -GCCgAGUUAGcCgGUCGCCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 49705 0.67 0.558796
Target:  5'- gGGCUgGAcacCGGCCAGCcgcaacGACGCCuGCg -3'
miRNA:   3'- gCCGAgUUa--GCCGGUCGc-----CUGUGG-UG- -5'
18994 3' -58.2 NC_004684.1 + 24269 0.67 0.558796
Target:  5'- cCGGCauu-UUGGgCGGCGG-CACCGCc -3'
miRNA:   3'- -GCCGaguuAGCCgGUCGCCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 51644 0.67 0.558796
Target:  5'- uCGGUgUAcgCGGCCAGUcgcuGGGCaacucGCCACg -3'
miRNA:   3'- -GCCGaGUuaGCCGGUCG----CCUG-----UGGUG- -5'
18994 3' -58.2 NC_004684.1 + 36794 0.67 0.558796
Target:  5'- uCGGCggCGGcUCGGUCAGCuacGACACC-Ca -3'
miRNA:   3'- -GCCGa-GUU-AGCCGGUCGc--CUGUGGuG- -5'
18994 3' -58.2 NC_004684.1 + 19365 0.67 0.548337
Target:  5'- gCGGCgCAAcaUGGCCga-GGACACCGCu -3'
miRNA:   3'- -GCCGaGUUa-GCCGGucgCCUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 60972 0.67 0.548337
Target:  5'- uGGCUgGuggcGUCGGCCucGGUGGugAUgACg -3'
miRNA:   3'- gCCGAgU----UAGCCGG--UCGCCugUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.