miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 3' -58.7 NC_004684.1 + 47239 0.66 0.583652
Target:  5'- gGUGcUCCUGGgcACCGggGCcgccuacGCCAcCGAGGCg -3'
miRNA:   3'- -UAC-AGGACC--UGGCa-CG-------CGGU-GCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 7111 0.66 0.57411
Target:  5'- uUGUCCUuGAUCGUGUaCUGCGGGAa -3'
miRNA:   3'- uACAGGAcCUGGCACGcGGUGCUCUg -5'
18995 3' -58.7 NC_004684.1 + 28630 0.66 0.563551
Target:  5'- gGUG-CCgacgaUGGAcuacCCGUuccgGUGCCGCGAGACg -3'
miRNA:   3'- -UACaGG-----ACCU----GGCA----CGCGGUGCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 65416 0.66 0.563551
Target:  5'- cGUGgccugCCUGGcgcugGCCGUgGUGCacaGCGAGGCc -3'
miRNA:   3'- -UACa----GGACC-----UGGCA-CGCGg--UGCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 39741 0.66 0.553044
Target:  5'- gGUGUCC---ACCGUG-GUCAUGAGACc -3'
miRNA:   3'- -UACAGGaccUGGCACgCGGUGCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 58798 0.66 0.546768
Target:  5'- gGUG-CCUGuGGCCGUGCGUgaggucuguuagccgCACGGucGACg -3'
miRNA:   3'- -UACaGGAC-CUGGCACGCG---------------GUGCU--CUG- -5'
18995 3' -58.7 NC_004684.1 + 60630 0.66 0.532216
Target:  5'- gGUGUCgacGGcACCGgGCGCgGCGAGAUc -3'
miRNA:   3'- -UACAGga-CC-UGGCaCGCGgUGCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 19006 0.67 0.510658
Target:  5'- -aGggCCUGGuCUGaUGCGCCGCGAccccgccGACg -3'
miRNA:   3'- uaCa-GGACCuGGC-ACGCGGUGCU-------CUG- -5'
18995 3' -58.7 NC_004684.1 + 9420 0.67 0.491473
Target:  5'- -aG-CCUGGACa----GCCGCGAGACg -3'
miRNA:   3'- uaCaGGACCUGgcacgCGGUGCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 56031 0.67 0.48151
Target:  5'- --cUgCUGGccaccACCGUGgGCCugGAGGCc -3'
miRNA:   3'- uacAgGACC-----UGGCACgCGGugCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 60688 0.67 0.471646
Target:  5'- gGUGaccggCCUGcGcACCGUGCGCgGCgugGAGACa -3'
miRNA:   3'- -UACa----GGAC-C-UGGCACGCGgUG---CUCUG- -5'
18995 3' -58.7 NC_004684.1 + 34569 0.68 0.461886
Target:  5'- gGUGUCCUcggcggugccGGACCGgGUGCCuCG-GGCa -3'
miRNA:   3'- -UACAGGA----------CCUGGCaCGCGGuGCuCUG- -5'
18995 3' -58.7 NC_004684.1 + 19456 0.68 0.452233
Target:  5'- gGUGUCCUcGGCCauguUGCGCCGCuGGAUc -3'
miRNA:   3'- -UACAGGAcCUGGc---ACGCGGUGcUCUG- -5'
18995 3' -58.7 NC_004684.1 + 54879 0.68 0.442691
Target:  5'- -gGUCgUGGcccucacaaCGUGCGgCACGAGGCg -3'
miRNA:   3'- uaCAGgACCug-------GCACGCgGUGCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 51043 0.69 0.387949
Target:  5'- -cGUgCUGGcgcacaccAUCGUGCGCCuggACGAGGCc -3'
miRNA:   3'- uaCAgGACC--------UGGCACGCGG---UGCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 29304 0.69 0.370716
Target:  5'- cAUGUCCUGG-CCGU-UGCCGucccacacCGAGACc -3'
miRNA:   3'- -UACAGGACCuGGCAcGCGGU--------GCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 14080 0.71 0.314621
Target:  5'- cGUGUCCagGuGGCCGggcuggccUGCGCCGCGcGACu -3'
miRNA:   3'- -UACAGGa-C-CUGGC--------ACGCGGUGCuCUG- -5'
18995 3' -58.7 NC_004684.1 + 60152 0.71 0.299819
Target:  5'- -cGggCCgccGGGCCGcGCGCCACGAGuGCg -3'
miRNA:   3'- uaCa-GGa--CCUGGCaCGCGGUGCUC-UG- -5'
18995 3' -58.7 NC_004684.1 + 13258 0.81 0.059239
Target:  5'- cUGUCCUGGACCagGUGCGCgucacgcgucagcgaCGCGAGGCg -3'
miRNA:   3'- uACAGGACCUGG--CACGCG---------------GUGCUCUG- -5'
18995 3' -58.7 NC_004684.1 + 13756 1.08 0.000662
Target:  5'- cAUGUCCUGGACCGUGCGCCACGAGACa -3'
miRNA:   3'- -UACAGGACCUGGCACGCGGUGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.