miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 52796 0.69 0.30906
Target:  5'- -aGCGUGGCgaGGCcGACGgGCGCgAGGAc -3'
miRNA:   3'- caCGCGCCG--CCGcUUGCaCGCG-UCCU- -5'
18995 5' -61.1 NC_004684.1 + 65844 0.69 0.316403
Target:  5'- -cGCGCGGCGGCcAACGccCGCgAGGc -3'
miRNA:   3'- caCGCGCCGCCGcUUGCacGCG-UCCu -5'
18995 5' -61.1 NC_004684.1 + 41697 0.69 0.30906
Target:  5'- -aGCGCGGCGaCG-GCGUGCGguucaaGGGAc -3'
miRNA:   3'- caCGCGCCGCcGCuUGCACGCg-----UCCU- -5'
18995 5' -61.1 NC_004684.1 + 21240 0.69 0.287813
Target:  5'- -gGCGUGGCcGCGAGguguuCGUGCGcCAGGu -3'
miRNA:   3'- caCGCGCCGcCGCUU-----GCACGC-GUCCu -5'
18995 5' -61.1 NC_004684.1 + 33489 0.69 0.287813
Target:  5'- gGUGgaCGCGGCGGCGGcccuguacucGCGgGCGguGGc -3'
miRNA:   3'- -CAC--GCGCCGCCGCU----------UGCaCGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 64542 0.69 0.287813
Target:  5'- -gGCuCGGCGGCcuuggugaccGggUugGUGCGCAGGAu -3'
miRNA:   3'- caCGcGCCGCCG----------CuuG--CACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 12018 0.69 0.323877
Target:  5'- --uCGCGGCGGCGGugGccaagGCcaugcucgaccaGCAGGAg -3'
miRNA:   3'- cacGCGCCGCCGCUugCa----CG------------CGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 45881 0.69 0.323877
Target:  5'- uGUGCGCgccguccacgcuGGCGGCGAAacgauguugGUGCGCucgcGGGc -3'
miRNA:   3'- -CACGCG------------CCGCCGCUUg--------CACGCGu---CCU- -5'
18995 5' -61.1 NC_004684.1 + 27983 0.69 0.316403
Target:  5'- aGUGCGgaguuCGGCGGCGucuGgGUGaUGCAGGu -3'
miRNA:   3'- -CACGC-----GCCGCCGCu--UgCAC-GCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 42706 0.69 0.301847
Target:  5'- -gGCgGCGGCGGgGGAgGUGC-CGGGu -3'
miRNA:   3'- caCG-CGCCGCCgCUUgCACGcGUCCu -5'
18995 5' -61.1 NC_004684.1 + 65773 0.69 0.294765
Target:  5'- -cGCGCGcCGGUGGGCGcGCGCAcGGc -3'
miRNA:   3'- caCGCGCcGCCGCUUGCaCGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 28728 0.69 0.30906
Target:  5'- -gGCGCGucuGCGGCaccGACGUGCGguGcGAg -3'
miRNA:   3'- caCGCGC---CGCCGc--UUGCACGCguC-CU- -5'
18995 5' -61.1 NC_004684.1 + 36844 0.7 0.267733
Target:  5'- -gGCGCGGCccuGGCG-GCGUcaGCGcCGGGAc -3'
miRNA:   3'- caCGCGCCG---CCGCuUGCA--CGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 22187 0.7 0.280991
Target:  5'- ---gGCGGCGGCGAccgccuuCGgacugGCGCAGGu -3'
miRNA:   3'- cacgCGCCGCCGCUu------GCa----CGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 54607 0.7 0.260658
Target:  5'- -cGCGCGuGCGcGCGuACGUGUGCgcgcgcgAGGAc -3'
miRNA:   3'- caCGCGC-CGC-CGCuUGCACGCG-------UCCU- -5'
18995 5' -61.1 NC_004684.1 + 60604 0.7 0.267083
Target:  5'- gGUGCGCaGGCcggucacccGGCGcACGUcgcccauGCGCAGGGu -3'
miRNA:   3'- -CACGCG-CCG---------CCGCuUGCA-------CGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 51579 0.7 0.267733
Target:  5'- cUGCGCGGCGGCGAcCGgGUGguccaAGGu -3'
miRNA:   3'- cACGCGCCGCCGCUuGCaCGCg----UCCu -5'
18995 5' -61.1 NC_004684.1 + 46601 0.7 0.274298
Target:  5'- -gGCGaCGGCGGCGGuuugguACGaGCGCAGu- -3'
miRNA:   3'- caCGC-GCCGCCGCU------UGCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 43487 0.7 0.267733
Target:  5'- -gGUGCGGCgGGCGcAGCG-GCaGCAGGu -3'
miRNA:   3'- caCGCGCCG-CCGC-UUGCaCG-CGUCCu -5'
18995 5' -61.1 NC_004684.1 + 18428 0.7 0.267733
Target:  5'- -gGCGCaccGGCGGCcGACGUGgcucccgaGCAGGAc -3'
miRNA:   3'- caCGCG---CCGCCGcUUGCACg-------CGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.