Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 19446 | 0.7 | 0.267733 |
Target: 5'- cGUGCGCccaugcccgGGCGGCGGugGcccgcgcgacaUGCGCcccuGGAg -3' miRNA: 3'- -CACGCG---------CCGCCGCUugC-----------ACGCGu---CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 3787 | 0.71 | 0.235044 |
Target: 5'- -aGCGCGGCGGCGcuGgcgaucuccugccaGCGUGCcaaCAGGGu -3' miRNA: 3'- caCGCGCCGCCGC--U--------------UGCACGc--GUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 22449 | 0.71 | 0.225291 |
Target: 5'- -gGCGCGGCGGCGAucccGCccGCGCuccAGGc -3' miRNA: 3'- caCGCGCCGCCGCU----UGcaCGCG---UCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 54346 | 0.71 | 0.227555 |
Target: 5'- -aGCGCGGCGGUGGAgauguuggcaagugcCGgGgGCGGGGu -3' miRNA: 3'- caCGCGCCGCCGCUU---------------GCaCgCGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 65444 | 0.71 | 0.230986 |
Target: 5'- -cGUGCGGCGcGCGGccacCGUGCGCcGGu -3' miRNA: 3'- caCGCGCCGC-CGCUu---GCACGCGuCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 10233 | 0.71 | 0.225291 |
Target: 5'- gGUGCGCGaGCaGCuGGcCGUGCGCGuGGAg -3' miRNA: 3'- -CACGCGC-CGcCG-CUuGCACGCGU-CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 45516 | 0.72 | 0.207341 |
Target: 5'- aUGaGCGGCGGCGacaccgaggccaagGugGUGCGcCAGGGu -3' miRNA: 3'- cACgCGCCGCCGC--------------UugCACGC-GUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 64932 | 0.72 | 0.203695 |
Target: 5'- gGUG-GCGGCGGUGAGCGccuggcggGCGguGGc -3' miRNA: 3'- -CACgCGCCGCCGCUUGCa-------CGCguCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 46299 | 0.72 | 0.20892 |
Target: 5'- -aGCGCGuuGCGGCGcuuGGCGUGCGCcagcgucuGGAg -3' miRNA: 3'- caCGCGC--CGCCGC---UUGCACGCGu-------CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 59948 | 0.72 | 0.198584 |
Target: 5'- cGUGCGCguugugcuGGCGGCGcuCGUGcCGCAcccGGAc -3' miRNA: 3'- -CACGCG--------CCGCCGCuuGCAC-GCGU---CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 8822 | 0.72 | 0.179246 |
Target: 5'- -gGCGCGGCGGCGAACaucgggaucaGCGCcgccauGGAg -3' miRNA: 3'- caCGCGCCGCCGCUUGca--------CGCGu-----CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 48381 | 0.72 | 0.193585 |
Target: 5'- gGUGCGCgaaGGcCGGUgGGACGUGCGCAuGGu -3' miRNA: 3'- -CACGCG---CC-GCCG-CUUGCACGCGU-CCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 29761 | 0.72 | 0.198584 |
Target: 5'- -cGCGCGGUcuGGuCGGcCGcGCGCAGGAg -3' miRNA: 3'- caCGCGCCG--CC-GCUuGCaCGCGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 63865 | 0.73 | 0.154985 |
Target: 5'- cGUGCGCGGUGGCGGccuucaucgggcccaGCGgUGC-CAGGu -3' miRNA: 3'- -CACGCGCCGCCGCU---------------UGC-ACGcGUCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 11879 | 0.73 | 0.154985 |
Target: 5'- -gGCGCuGGCGGUGAacacaccgggauucaACGUGCGCGGc- -3' miRNA: 3'- caCGCG-CCGCCGCU---------------UGCACGCGUCcu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 34085 | 0.73 | 0.161176 |
Target: 5'- -gGCGCGGCGggcGCGAACaacgcgaGUGCGCAGa- -3' miRNA: 3'- caCGCGCCGC---CGCUUG-------CACGCGUCcu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 55411 | 0.73 | 0.161176 |
Target: 5'- cUGCGCuGGCGGUGGagaccacccagcaGCGUGCGCcGGu -3' miRNA: 3'- cACGCG-CCGCCGCU-------------UGCACGCGuCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 59625 | 0.73 | 0.153371 |
Target: 5'- -cGCGCuGGCGGUgcaGGACcuGUGCGCAGGc -3' miRNA: 3'- caCGCG-CCGCCG---CUUG--CACGCGUCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 15250 | 0.73 | 0.169776 |
Target: 5'- gGUGCGUGGCGGCG-GCGgccagcUGCGCGcuggcguGGAu -3' miRNA: 3'- -CACGCGCCGCCGCuUGC------ACGCGU-------CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 62439 | 0.73 | 0.165856 |
Target: 5'- gGUGCGCaGGCuGGCGcGCGcUGUGCuGGAg -3' miRNA: 3'- -CACGCG-CCG-CCGCuUGC-ACGCGuCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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