Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 18995 | 5' | -61.1 | NC_004684.1 | + | 42227 | 0.74 | 0.143247 |
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Target: 5'- cGUGCGUGGUGGCGucgGCGUugaacaccaugucgcGCGCGGuGAa -3' miRNA: 3'- -CACGCGCCGCCGCu--UGCA---------------CGCGUC-CU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 25471 | 0.74 | 0.145528 |
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Target: 5'- uGUGCGCGGCGGCGua-G-GCGCugaccGGGu -3' miRNA: 3'- -CACGCGCCGCCGCuugCaCGCGu----CCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 26583 | 0.75 | 0.127497 |
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Target: 5'- -cGCGCGGCGGU----GUGCGCGGGu -3' miRNA: 3'- caCGCGCCGCCGcuugCACGCGUCCu -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 62983 | 0.75 | 0.124148 |
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Target: 5'- gGUGCGCacguggccGGUGGCcggGAACGcgaUGCGCAGGAu -3' miRNA: 3'- -CACGCG--------CCGCCG---CUUGC---ACGCGUCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 40733 | 0.75 | 0.120881 |
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Target: 5'- -aGCGCGGCGG-GGGCGgugGCGguGGu -3' miRNA: 3'- caCGCGCCGCCgCUUGCa--CGCguCCu -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 22359 | 0.75 | 0.117694 |
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Target: 5'- -gGCgGCGGCGGCGGucGCGcugGCGguGGAc -3' miRNA: 3'- caCG-CGCCGCCGCU--UGCa--CGCguCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 40707 | 0.78 | 0.072237 |
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Target: 5'- -cGCGCGGCGGUGAucaACGUGgUGCuGGAc -3' miRNA: 3'- caCGCGCCGCCGCU---UGCAC-GCGuCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 13721 | 1.08 | 0.00042 |
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Target: 5'- gGUGCGCGGCGGCGAACGUGCGCAGGAa -3' miRNA: 3'- -CACGCGCCGCCGCUUGCACGCGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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