Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 18995 | 5' | -61.1 | NC_004684.1 | + | 41568 | 0.66 | 0.449351 |
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Target: 5'- gGUGCGacaccuugcuuCGGCGGCGGcauuuccugGCGCAGGu -3' miRNA: 3'- -CACGC-----------GCCGCCGCUugca-----CGCGUCCu -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 67159 | 0.66 | 0.441897 |
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Target: 5'- --uCGUGGCGGCGAuguACGgcaugGUGCcGGAc -3' miRNA: 3'- cacGCGCCGCCGCU---UGCa----CGCGuCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 39037 | 0.66 | 0.441897 |
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Target: 5'- -gGCuCGGCGGUGuccauUGUGCGCcGGGu -3' miRNA: 3'- caCGcGCCGCCGCuu---GCACGCGuCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 33833 | 0.66 | 0.441897 |
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Target: 5'- uGUGCccgGCGGCGGCGGcaACG-GgGCcaaccaAGGAu -3' miRNA: 3'- -CACG---CGCCGCCGCU--UGCaCgCG------UCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 28273 | 0.66 | 0.440971 |
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Target: 5'- gGUGCGCgaGGCcGCuGGCGUGgugcucaCGCAGGAg -3' miRNA: 3'- -CACGCG--CCGcCGcUUGCAC-------GCGUCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 57158 | 0.66 | 0.432679 |
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Target: 5'- aUG-GCGGCGGUGGccgacgcgcACGcucggGCGCAGGc -3' miRNA: 3'- cACgCGCCGCCGCU---------UGCa----CGCGUCCu -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 16749 | 0.66 | 0.479837 |
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Target: 5'- -aGCGCGGCuGGCcugGAACu--CGCGGGGa -3' miRNA: 3'- caCGCGCCG-CCG---CUUGcacGCGUCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 23714 | 0.65 | 0.486641 |
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Target: 5'- cUGgGCGGCGGCGcgcucaacaucgcuGGCG-GCGCAc-- -3' miRNA: 3'- cACgCGCCGCCGC--------------UUGCaCGCGUccu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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