Results 101 - 108 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 65546 | 0.67 | 0.396964 |
Target: 5'- -aGCGCGGUGGCGuaccCGUaguaauacCGCAGGu -3' miRNA: 3'- caCGCGCCGCCGCuu--GCAc-------GCGUCCu -5' |
|||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 65773 | 0.69 | 0.294765 |
Target: 5'- -cGCGCGcCGGUGGGCGcGCGCAcGGc -3' miRNA: 3'- caCGCGCcGCCGCUUGCaCGCGU-CCu -5' |
|||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 65844 | 0.69 | 0.316403 |
Target: 5'- -cGCGCGGCGGCcAACGccCGCgAGGc -3' miRNA: 3'- caCGCGCCGCCGcUUGCacGCG-UCCu -5' |
|||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 66266 | 0.66 | 0.470199 |
Target: 5'- -aGCGCGGCGucgucccaGCGGACG-GCcacguuGCGGGu -3' miRNA: 3'- caCGCGCCGC--------CGCUUGCaCG------CGUCCu -5' |
|||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 66529 | 0.68 | 0.342347 |
Target: 5'- -aGCGCGGCccGGCGGGCacggcgguaggcguuGUGCGCcucaccGGAa -3' miRNA: 3'- caCGCGCCG--CCGCUUG---------------CACGCGu-----CCU- -5' |
|||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 66681 | 0.67 | 0.42448 |
Target: 5'- gGUGCccaggucuucccaccCGGCGGCGGucuuGCGcUGCGCGGcGAa -3' miRNA: 3'- -CACGc--------------GCCGCCGCU----UGC-ACGCGUC-CU- -5' |
|||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 66881 | 0.67 | 0.423574 |
Target: 5'- -aGCGcCGGUGGCGAccuuCG-GCGCGGc- -3' miRNA: 3'- caCGC-GCCGCCGCUu---GCaCGCGUCcu -5' |
|||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 67159 | 0.66 | 0.441897 |
Target: 5'- --uCGUGGCGGCGAuguACGgcaugGUGCcGGAc -3' miRNA: 3'- cacGCGCCGCCGCU---UGCa----CGCGuCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home